(17 nodes) HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain network (Nocardia nova)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHH16801.1	Putative two-component system sensor kinase. (538 aa)
	AHH15384.1	Putative two-component system sensor kinase. (528 aa)
	AHH15534.1	Putative two-component system sensor kinase. (454 aa)
	AHH15538.1	Putative histidine kinase. (1251 aa)
	AHH15966.1	Putative two-component system sensor kinase. (436 aa)
	AHH16370.1	Two-component system sensor kinase. (531 aa)
	AHH17660.1	Histidine kinase. (709 aa)
	AHH17925.1	Putative two-component system sensor kinase. (460 aa)
	AHH19701.1	Putative two-component system sensor kinase. (368 aa)
	AHH20335.1	Putative two-component system sensor kinase. (536 aa)
	AHH20408.1	Putative two-component system sensor kinase. (345 aa)
	AHH21082.1	Putative two-component system sensor kinase. (624 aa)
	AHH21176.1	Putative two-component system sensor kinase. (452 aa)
	AHH21325.1	Putative adenylate cyclase. (507 aa)
	AHH21545.1	Putative two-component system sensor kinase. (464 aa)
	AHH21547.1	Putative histidine kinase. (1040 aa)
	AHH22213.1	Adenylate and Guanylate cyclase catalytic domain/HAMP domain-containing protein. (489 aa)

Your Current Organism:

Nocardia nova

NCBI taxonomy Id: 1415166
Other names: N. nova SH22a, Nocardia nova SH22a

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHH15384.1	AHH15534.1	NONO_c05720	NONO_c07260	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.494
AHH15384.1	AHH16370.1	NONO_c05720	NONO_c15690	Putative two-component system sensor kinase.	Two-component system sensor kinase.	0.448
AHH15384.1	AHH17925.1	NONO_c05720	NONO_c31380	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.478
AHH15384.1	AHH20408.1	NONO_c05720	NONO_c56280	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.487
AHH15384.1	AHH21176.1	NONO_c05720	NONO_c64060	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.475
AHH15384.1	AHH21545.1	NONO_c05720	NONO_c67780	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.402
AHH15534.1	AHH15384.1	NONO_c07260	NONO_c05720	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.494
AHH15534.1	AHH16801.1	NONO_c07260	NONO_c20010	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.606
AHH15534.1	AHH17925.1	NONO_c07260	NONO_c31380	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.524
AHH15534.1	AHH20335.1	NONO_c07260	NONO_c55550	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.447
AHH15534.1	AHH21082.1	NONO_c07260	NONO_c63120	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.455
AHH15538.1	AHH16801.1	NONO_c07300	NONO_c20010	Putative histidine kinase.	Putative two-component system sensor kinase.	0.442
AHH15966.1	AHH16801.1	NONO_c11590	NONO_c20010	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.526
AHH16370.1	AHH15384.1	NONO_c15690	NONO_c05720	Two-component system sensor kinase.	Putative two-component system sensor kinase.	0.448
AHH16370.1	AHH16801.1	NONO_c15690	NONO_c20010	Two-component system sensor kinase.	Putative two-component system sensor kinase.	0.500
AHH16370.1	AHH20335.1	NONO_c15690	NONO_c55550	Two-component system sensor kinase.	Putative two-component system sensor kinase.	0.441
AHH16370.1	AHH21082.1	NONO_c15690	NONO_c63120	Two-component system sensor kinase.	Putative two-component system sensor kinase.	0.418
AHH16801.1	AHH15534.1	NONO_c20010	NONO_c07260	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.606
AHH16801.1	AHH15538.1	NONO_c20010	NONO_c07300	Putative two-component system sensor kinase.	Putative histidine kinase.	0.442
AHH16801.1	AHH15966.1	NONO_c20010	NONO_c11590	Putative two-component system sensor kinase.	Putative two-component system sensor kinase.	0.526