(12 nodes) Mixed, incl. Helicase/UvrB, N-terminal, and Acetyltransferase complex network (Streptomyces sp. NRRLB1140)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KOX05026.1	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	KOX03320.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	KOX01060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	KOX01079.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1055 aa)
	KOX00196.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	KOV99853.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)
	KOV97826.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	KOV97529.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)
	KOV95867.1	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	KOV94522.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	KOV94523.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	KOV93489.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)

Your Current Organism:

Streptomyces sp. NRRLB1140

NCBI taxonomy Id: 1415549
Other names: S. sp. NRRL B-1140, Streptomyces sp. NRRL B-1140

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOV93489.1	KOV94522.1	ADK65_32715	ADK65_31450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOV93489.1	KOV95867.1	ADK65_32715	ADK65_28980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KOV93489.1	KOV97529.1	ADK65_32715	ADK65_25095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
KOV93489.1	KOV97826.1	ADK65_32715	ADK65_24550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KOV93489.1	KOV99853.1	ADK65_32715	ADK65_17160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
KOV93489.1	KOX00196.1	ADK65_32715	ADK65_15765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KOV93489.1	KOX01060.1	ADK65_32715	ADK65_11405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KOV93489.1	KOX01079.1	ADK65_32715	ADK65_11690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KOV93489.1	KOX03320.1	ADK65_32715	ADK65_07085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOV94522.1	KOV93489.1	ADK65_31450	ADK65_32715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOV94522.1	KOV94523.1	ADK65_31450	ADK65_31455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KOV94522.1	KOV95867.1	ADK65_31450	ADK65_28980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
KOV94522.1	KOV97826.1	ADK65_31450	ADK65_24550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
KOV94522.1	KOV99853.1	ADK65_31450	ADK65_17160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KOV94522.1	KOX01060.1	ADK65_31450	ADK65_11405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
KOV94522.1	KOX01079.1	ADK65_31450	ADK65_11690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
KOV94523.1	KOV94522.1	ADK65_31455	ADK65_31450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KOV95867.1	KOV93489.1	ADK65_28980	ADK65_32715	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KOV95867.1	KOV94522.1	ADK65_28980	ADK65_31450	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
KOV95867.1	KOV97529.1	ADK65_28980	ADK65_25095	Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860