(10 nodes) DNA polymerase activity, and Exonuclease, RNase T/DNA polymerase III network (Streptomyces sp. NRRLB1140)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KOX06349.1	3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	KOX05024.1	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	KOX02546.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	KOX01148.1	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KOX00476.1	DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology. (854 aa)
	KOX00251.1	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	KOV98255.1	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1179 aa)
	KOV98055.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	KOV98056.1	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. (1181 aa)
	KOV98057.1	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)

Your Current Organism:

Streptomyces sp. NRRLB1140

NCBI taxonomy Id: 1415549
Other names: S. sp. NRRL B-1140, Streptomyces sp. NRRL B-1140

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOV98055.1	KOV98056.1	ADK65_23455	ADK65_23460	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.784
KOV98055.1	KOV98057.1	ADK65_23455	ADK65_23465	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KOV98056.1	KOV98055.1	ADK65_23460	ADK65_23455	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KOV98056.1	KOV98057.1	ADK65_23460	ADK65_23465	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
KOV98056.1	KOV98255.1	ADK65_23460	ADK65_21085	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
KOV98056.1	KOX00251.1	ADK65_23460	ADK65_15840	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KOV98056.1	KOX00476.1	ADK65_23460	ADK65_12185	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
KOV98056.1	KOX01148.1	ADK65_23460	ADK65_10600	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
KOV98056.1	KOX02546.1	ADK65_23460	ADK65_08060	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
KOV98056.1	KOX05024.1	ADK65_23460	ADK65_03405	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KOV98056.1	KOX06349.1	ADK65_23460	ADK65_00780	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KOV98057.1	KOV98055.1	ADK65_23465	ADK65_23455	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KOV98057.1	KOV98056.1	ADK65_23465	ADK65_23460	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.982
KOV98057.1	KOV98255.1	ADK65_23465	ADK65_21085	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
KOV98057.1	KOX01148.1	ADK65_23465	ADK65_10600	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
KOV98255.1	KOV98056.1	ADK65_21085	ADK65_23460	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.775
KOV98255.1	KOV98057.1	ADK65_21085	ADK65_23465	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
KOV98255.1	KOX00251.1	ADK65_21085	ADK65_15840	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KOV98255.1	KOX00476.1	ADK65_21085	ADK65_12185	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KOV98255.1	KOX01148.1	ADK65_21085	ADK65_10600	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995