Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AOT68462.1 | AOT68467.1 | Gferi_01955 | Gferi_01980 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.952 |
| AOT68462.1 | AOT71701.1 | Gferi_01955 | Gferi_20470 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.442 |
| AOT68462.1 | ddl | Gferi_01955 | Gferi_02890 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.647 |
| AOT68462.1 | ddl-2 | Gferi_01955 | Gferi_11555 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.664 |
| AOT68462.1 | mraY | Gferi_01955 | Gferi_01965 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.961 |
| AOT68462.1 | murA | Gferi_01955 | Gferi_01945 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.876 |
| AOT68462.1 | murA-2 | Gferi_01955 | Gferi_10975 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.727 |
| AOT68462.1 | murA-3 | Gferi_01955 | Gferi_13790 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.745 |
| AOT68462.1 | murB | Gferi_01955 | Gferi_20880 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.559 |
| AOT68462.1 | murC | Gferi_01955 | Gferi_16705 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.875 |
| AOT68462.1 | murD | Gferi_01955 | Gferi_01960 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.980 |
| AOT68462.1 | murE | Gferi_01955 | Gferi_01975 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.910 |
| AOT68462.1 | murF | Gferi_01955 | Gferi_01970 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | Hypothetical protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.959 |
| AOT68462.1 | murF-2 | Gferi_01955 | Gferi_02885 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.763 |
| AOT68462.1 | murG | Gferi_01955 | Gferi_01950 | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.989 |
| AOT68467.1 | AOT68462.1 | Gferi_01980 | Gferi_01955 | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Stage V sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. | 0.952 |
| AOT68467.1 | AOT71701.1 | Gferi_01980 | Gferi_20470 | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.410 |
| AOT68467.1 | ddl | Gferi_01980 | Gferi_02890 | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.582 |
| AOT68467.1 | ddl-2 | Gferi_01980 | Gferi_11555 | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.633 |
| AOT68467.1 | mraY | Gferi_01980 | Gferi_01965 | Stage V sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.962 |
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