(16 nodes) Mixed, incl. Thiamine diphosphate metabolic process, and FAD binding domain network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT68204.1	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa)
	AOT72931.1	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	AOT68205.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AOT68206.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AOT68207.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	AOT68208.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AOT68209.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AOT68210.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	AOT70978.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	AOT73166.1	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	AOT73228.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	AOT72645.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AOT72648.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	AOT72650.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	AOT72651.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AOT73308.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68204.1	AOT68205.1	Gferi_00545	Gferi_00555	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AOT68204.1	AOT68206.1	Gferi_00545	Gferi_00560	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AOT68204.1	AOT68207.1	Gferi_00545	Gferi_00565	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AOT68204.1	AOT68208.1	Gferi_00545	Gferi_00570	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
AOT68204.1	AOT68209.1	Gferi_00545	Gferi_00575	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AOT68204.1	AOT68210.1	Gferi_00545	Gferi_00580	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AOT68204.1	AOT70978.1	Gferi_00545	Gferi_16245	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AOT68204.1	AOT72931.1	Gferi_00545	Gferi_00550	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AOT68204.1	AOT73166.1	Gferi_00545	Gferi_16250	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AOT68204.1	AOT73308.1	Gferi_00545	Gferi_25710	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AOT68205.1	AOT68204.1	Gferi_00555	Gferi_00545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AOT68205.1	AOT68206.1	Gferi_00555	Gferi_00560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AOT68205.1	AOT68207.1	Gferi_00555	Gferi_00565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AOT68205.1	AOT68208.1	Gferi_00555	Gferi_00570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AOT68205.1	AOT68209.1	Gferi_00555	Gferi_00575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AOT68205.1	AOT68210.1	Gferi_00555	Gferi_00580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AOT68205.1	AOT72650.1	Gferi_00555	Gferi_25700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AOT68205.1	AOT72931.1	Gferi_00555	Gferi_00550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AOT68205.1	AOT73166.1	Gferi_00555	Gferi_16250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde:ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AOT68206.1	AOT68204.1	Gferi_00560	Gferi_00545	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724