(47 nodes) Mixed, incl. ABC transporter, permease, and ABC-type carbohydrate transporter activity network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT72986.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (429 aa)
	AOT68812.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (347 aa)
	AOT72987.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AOT68813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AOT68814.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (63 aa)
	ftsH	Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (522 aa)
	AOT69591.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (322 aa)
	AOT69592.1	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	AOT69593.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AOT69594.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AOT73042.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	AOT69762.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
	AOT69763.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (364 aa)
	AOT73057.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AOT69764.1	BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AOT70619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	AOT70620.1	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AOT70621.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (337 aa)
	AOT70622.1	BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AOT70754.1	Galactose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AOT73142.1	Galactose/methyl galactoside ABC transporter ATP-binding protein MglA; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AOT73143.1	Galactoside ABC transporter permease MglC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	AOT70966.1	BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	AOT70967.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	AOT70968.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (369 aa)
	AOT70969.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
	AOT71566.1	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AOT71567.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AOT71568.1	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AOT71569.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AOT71570.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	AOT73219.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
	AOT71571.1	With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (345 aa)
	AOT71572.1	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	AOT71580.1	Galactose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AOT73222.1	Galactose/methyl galactoside ABC transporter ATP-binding protein MglA; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AOT73223.1	Galactoside ABC transporter permease MglC; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AOT72420.1	BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AOT73286.1	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	AOT72421.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (365 aa)
	AOT72422.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (319 aa)
	AOT72567.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AOT72568.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	AOT72569.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (318 aa)
	AOT72613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	xylG	D-xylose ABC transporter ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (505 aa)
	AOT72615.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (407 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68812.1	AOT68813.1	Gferi_04105	Gferi_04115	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AOT68812.1	AOT69592.1	Gferi_04105	Gferi_08365	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AOT68812.1	AOT69593.1	Gferi_04105	Gferi_08370	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT70619.1	Gferi_04105	Gferi_14190	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AOT68812.1	AOT70620.1	Gferi_04105	Gferi_14195	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AOT68812.1	AOT70622.1	Gferi_04105	Gferi_14205	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT70754.1	Gferi_04105	Gferi_14915	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Galactose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT71570.1	Gferi_04105	Gferi_19745	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AOT68812.1	AOT71572.1	Gferi_04105	Gferi_19760	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT71580.1	Gferi_04105	Gferi_19810	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Galactose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT72567.1	Gferi_04105	Gferi_25240	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AOT68812.1	AOT72568.1	Gferi_04105	Gferi_25245	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AOT68812.1	AOT72986.1	Gferi_04105	Gferi_04100	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.886
AOT68812.1	AOT72987.1	Gferi_04105	Gferi_04110	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AOT68812.1	AOT73142.1	Gferi_04105	Gferi_14920	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Galactose/methyl galactoside ABC transporter ATP-binding protein MglA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AOT68812.1	AOT73222.1	Gferi_04105	Gferi_19815	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	Galactose/methyl galactoside ABC transporter ATP-binding protein MglA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AOT68812.1	xylG	Gferi_04105	Gferi_25505	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	D-xylose ABC transporter ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.473
AOT68813.1	AOT68812.1	Gferi_04115	Gferi_04105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.931
AOT68813.1	AOT68814.1	Gferi_04115	Gferi_04120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
AOT68813.1	AOT72986.1	Gferi_04115	Gferi_04100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.931