(8 nodes) Mixed, incl. DeoC/LacD family aldolase, and Putative sugar-binding domain network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT71566.1	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AOT71567.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AOT71568.1	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AOT71569.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AOT71570.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	AOT73219.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
	AOT71571.1	With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (345 aa)
	AOT71572.1	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT71566.1	AOT71567.1	Gferi_19725	Gferi_19730	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOT71566.1	AOT71568.1	Gferi_19725	Gferi_19735	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOT71566.1	AOT71569.1	Gferi_19725	Gferi_19740	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AOT71566.1	AOT71570.1	Gferi_19725	Gferi_19745	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AOT71566.1	AOT71571.1	Gferi_19725	Gferi_19755	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.651
AOT71566.1	AOT71572.1	Gferi_19725	Gferi_19760	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AOT71566.1	AOT73219.1	Gferi_19725	Gferi_19750	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.608
AOT71567.1	AOT71566.1	Gferi_19730	Gferi_19725	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOT71567.1	AOT71568.1	Gferi_19730	Gferi_19735	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AOT71567.1	AOT71569.1	Gferi_19730	Gferi_19740	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AOT71567.1	AOT71570.1	Gferi_19730	Gferi_19745	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AOT71567.1	AOT71571.1	Gferi_19730	Gferi_19755	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.677
AOT71567.1	AOT71572.1	Gferi_19730	Gferi_19760	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AOT71567.1	AOT73219.1	Gferi_19730	Gferi_19750	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.641
AOT71568.1	AOT71566.1	Gferi_19735	Gferi_19725	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Involved in autoinducer 2 transport and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOT71568.1	AOT71567.1	Gferi_19735	Gferi_19730	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AOT71568.1	AOT71569.1	Gferi_19735	Gferi_19740	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AOT71568.1	AOT71570.1	Gferi_19735	Gferi_19745	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
AOT71568.1	AOT71571.1	Gferi_19735	Gferi_19755	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	With IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.649
AOT71568.1	AOT71572.1	Gferi_19735	Gferi_19760	Autoinducer-2 kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839