(6 nodes) Mixed, incl. GAF domain, and HPT domain superfamily network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT69309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (978 aa)
	AOT70773.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AOT70774.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1182 aa)
	AOT73182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	AOT71111.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (299 aa)
	AOT71733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (893 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT69309.1	AOT70773.1	Gferi_06830	Gferi_15035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOT69309.1	AOT70774.1	Gferi_06830	Gferi_15040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOT69309.1	AOT71111.1	Gferi_06830	Gferi_17080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.978
AOT69309.1	AOT71733.1	Gferi_06830	Gferi_20665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
AOT69309.1	AOT73182.1	Gferi_06830	Gferi_17070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOT70773.1	AOT69309.1	Gferi_15035	Gferi_06830	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
AOT70773.1	AOT70774.1	Gferi_15035	Gferi_15040	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOT70773.1	AOT71111.1	Gferi_15035	Gferi_17080	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.957
AOT70773.1	AOT71733.1	Gferi_15035	Gferi_20665	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.986
AOT70773.1	AOT73182.1	Gferi_15035	Gferi_17070	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AOT70774.1	AOT69309.1	Gferi_15040	Gferi_06830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AOT70774.1	AOT70773.1	Gferi_15040	Gferi_15035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOT70774.1	AOT71111.1	Gferi_15040	Gferi_17080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.941
AOT70774.1	AOT71733.1	Gferi_15040	Gferi_20665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AOT70774.1	AOT73182.1	Gferi_15040	Gferi_17070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOT71111.1	AOT69309.1	Gferi_17080	Gferi_06830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.978
AOT71111.1	AOT70773.1	Gferi_17080	Gferi_15035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AOT71111.1	AOT70774.1	Gferi_17080	Gferi_15040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AOT71111.1	AOT71733.1	Gferi_17080	Gferi_20665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
AOT71111.1	AOT73182.1	Gferi_17080	Gferi_17070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997