(17 nodes) Mixed, incl. ABC transporter transmembrane region, and Creatinase, N-terminal network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT68948.1	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (832 aa)
	AOT72999.1	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
	AOT68949.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (278 aa)
	AOT68950.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AOT68951.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (76 aa)
	AOT70788.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AOT73149.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
	AOT70789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AOT70791.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	AOT70793.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (98 aa)
	AOT73150.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	AOT70814.1	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AOT71628.1	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AOT71629.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	AOT71630.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)
	AOT72063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	AOT72064.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68948.1	AOT68949.1	Gferi_04890	Gferi_04900	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929
AOT68948.1	AOT68950.1	Gferi_04890	Gferi_04905	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.548
AOT68948.1	AOT68951.1	Gferi_04890	Gferi_04910	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AOT68948.1	AOT70788.1	Gferi_04890	Gferi_15205	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AOT68948.1	AOT70814.1	Gferi_04890	Gferi_15375	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AOT68948.1	AOT71629.1	Gferi_04890	Gferi_20075	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOT68948.1	AOT71630.1	Gferi_04890	Gferi_20080	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AOT68948.1	AOT72999.1	Gferi_04890	Gferi_04895	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AOT68948.1	AOT73149.1	Gferi_04890	Gferi_15210	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AOT68949.1	AOT68948.1	Gferi_04900	Gferi_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929
AOT68949.1	AOT68950.1	Gferi_04900	Gferi_04905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.647
AOT68949.1	AOT68951.1	Gferi_04900	Gferi_04910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.498
AOT68949.1	AOT71629.1	Gferi_04900	Gferi_20075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AOT68949.1	AOT71630.1	Gferi_04900	Gferi_20080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AOT68949.1	AOT72999.1	Gferi_04900	Gferi_04895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AOT68950.1	AOT68948.1	Gferi_04905	Gferi_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.548
AOT68950.1	AOT68949.1	Gferi_04905	Gferi_04900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.647
AOT68950.1	AOT68951.1	Gferi_04905	Gferi_04910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.594
AOT68950.1	AOT72999.1	Gferi_04905	Gferi_04895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AOT68951.1	AOT68948.1	Gferi_04910	Gferi_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418