(61 nodes) ABC transporter type 1, transmembrane domain MetI-like network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT69545.1	Nickel ABC transporter permease subunit NikC; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AOT68189.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AOT68190.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AOT68714.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (570 aa)
	AOT72997.1	Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	AOT68927.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (97 aa)
	AOT68968.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (62 aa)
	AOT69005.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AOT69007.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AOT69194.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AOT73021.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AOT69302.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AOT69312.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AOT73022.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AOT69432.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AOT69433.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	nikC	Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AOT69442.1	Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AOT69463.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AOT69546.1	Nickel ABC transporter permease subunit NikB; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AOT73048.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AOT69668.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AOT73051.1	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AOT73060.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AOT69796.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AOT69865.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AOT70417.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (766 aa)
	AOT70418.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (811 aa)
	AOT70890.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AOT70891.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AOT71373.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AOT71374.1	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AOT71474.1	Molybdenum ABC transporter permease subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (228 aa)
	AOT73214.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AOT71478.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AOT71621.1	Nickel ABC transporter permease subunit NikC; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AOT71622.1	Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AOT71624.1	Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	nikC-2	Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AOT71668.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AOT71669.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AOT71689.1	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (294 aa)
	AOT73231.1	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AOT73241.1	Tungstate transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AOT71765.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AOT71766.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AOT71946.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AOT71947.1	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AOT71997.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AOT71998.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AOT72060.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AOT73267.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AOT72100.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
	AOT72449.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AOT72450.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (277 aa)
	AOT72481.1	Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	nikC-3	Nickel ABC transporter permease subunit NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AOT72487.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AOT72488.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AOT72559.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AOT72560.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68189.1	AOT68190.1	Gferi_00470	Gferi_00475	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOT68189.1	AOT69302.1	Gferi_00470	Gferi_06795	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AOT68189.1	AOT71668.1	Gferi_00470	Gferi_20290	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AOT68189.1	AOT71765.1	Gferi_00470	Gferi_20850	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AOT68189.1	AOT71997.1	Gferi_00470	Gferi_22115	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AOT68189.1	AOT72449.1	Gferi_00470	Gferi_24600	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.902
AOT68189.1	AOT73022.1	Gferi_00470	Gferi_06850	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AOT68189.1	AOT73051.1	Gferi_00470	Gferi_08800	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AOT68189.1	AOT73214.1	Gferi_00470	Gferi_19250	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AOT68190.1	AOT68189.1	Gferi_00475	Gferi_00470	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOT68190.1	AOT69312.1	Gferi_00475	Gferi_06845	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AOT68190.1	AOT69668.1	Gferi_00475	Gferi_08795	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
AOT68190.1	AOT71478.1	Gferi_00475	Gferi_19255	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AOT68190.1	AOT71669.1	Gferi_00475	Gferi_20295	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOT68190.1	AOT71766.1	Gferi_00475	Gferi_20855	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AOT68190.1	AOT71998.1	Gferi_00475	Gferi_22120	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOT68190.1	AOT72450.1	Gferi_00475	Gferi_24605	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.909
AOT68190.1	AOT73021.1	Gferi_00475	Gferi_06790	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AOT68714.1	AOT69433.1	Gferi_03450	Gferi_07525	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AOT68714.1	AOT72100.1	Gferi_03450	Gferi_22710	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927