(6 nodes) Mga helix-turn-helix domain network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT68628.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (642 aa)
	AOT68880.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (676 aa)
	AOT68990.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (481 aa)
	AOT70388.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
	AOT71562.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)
	AOT72098.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (701 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68628.1	AOT68880.1	Gferi_02855	Gferi_04500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
AOT68628.1	AOT68990.1	Gferi_02855	Gferi_05115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.721
AOT68628.1	AOT70388.1	Gferi_02855	Gferi_12780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AOT68628.1	AOT71562.1	Gferi_02855	Gferi_19700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AOT68628.1	AOT72098.1	Gferi_02855	Gferi_22690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.722
AOT68880.1	AOT68628.1	Gferi_04500	Gferi_02855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
AOT68880.1	AOT68990.1	Gferi_04500	Gferi_05115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.711
AOT68880.1	AOT70388.1	Gferi_04500	Gferi_12780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AOT68880.1	AOT71562.1	Gferi_04500	Gferi_19700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AOT68880.1	AOT72098.1	Gferi_04500	Gferi_22690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.717
AOT68990.1	AOT68628.1	Gferi_05115	Gferi_02855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.721
AOT68990.1	AOT68880.1	Gferi_05115	Gferi_04500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.711
AOT68990.1	AOT70388.1	Gferi_05115	Gferi_12780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AOT68990.1	AOT71562.1	Gferi_05115	Gferi_19700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AOT68990.1	AOT72098.1	Gferi_05115	Gferi_22690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.445
AOT70388.1	AOT68628.1	Gferi_12780	Gferi_02855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.718
AOT70388.1	AOT68880.1	Gferi_12780	Gferi_04500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.718
AOT70388.1	AOT68990.1	Gferi_12780	Gferi_05115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.452
AOT70388.1	AOT71562.1	Gferi_12780	Gferi_19700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AOT70388.1	AOT72098.1	Gferi_12780	Gferi_22690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.452