(6 nodes) Chloramphenicol acetyltransferase-like domain superfamily network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gferi_18130	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AOT72504.1	PdhC; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	AOT70553.1	Chloramphenicol acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AOT71041.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AOT71138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AOT71304.1	Chloramphenicol acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT71041.1	AOT71138.1	Gferi_16640	Gferi_17220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AOT71041.1	AOT72504.1	Gferi_16640	Gferi_24895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AOT71138.1	AOT71041.1	Gferi_17220	Gferi_16640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AOT71138.1	AOT72504.1	Gferi_17220	Gferi_24895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AOT72504.1	AOT71041.1	Gferi_24895	Gferi_16640	PdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AOT72504.1	AOT71138.1	Gferi_24895	Gferi_17220	PdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912