(9 nodes) MacB-like periplasmic core domain network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT71671.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (453 aa)
	AOT68187.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AOT69365.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AOT69579.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (846 aa)
	AOT69740.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	AOT69995.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AOT73084.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
	AOT73089.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	AOT72000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT69365.1	AOT73084.1	Gferi_07125	Gferi_11680	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOT69740.1	AOT73084.1	Gferi_09175	Gferi_11680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AOT69995.1	AOT73084.1	Gferi_10595	Gferi_11680	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AOT73084.1	AOT69365.1	Gferi_11680	Gferi_07125	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOT73084.1	AOT69740.1	Gferi_11680	Gferi_09175	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AOT73084.1	AOT69995.1	Gferi_11680	Gferi_10595	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401