(18 nodes) ABC transporter type 1, transmembrane domain superfamily network (Geosporobacter ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOT69024.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (598 aa)
	AOT68948.1	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (832 aa)
	AOT72999.1	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
	AOT69025.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa)
	AOT69063.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (609 aa)
	AOT73008.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)
	AOT69298.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa)
	AOT69299.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	AOT69853.1	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	AOT69854.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	AOT70788.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AOT73149.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
	AOT70814.1	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AOT71629.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	AOT71630.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)
	AOT72016.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AOT72017.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	AOT72021.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)

Your Current Organism:

Geosporobacter ferrireducens

NCBI taxonomy Id: 1424294
Other names: G. ferrireducens, Geosporobacter sp. IRF9, JCM 19987, KCTC 15395, strain IRF9

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOT68948.1	AOT69024.1	Gferi_04890	Gferi_05300	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.596
AOT68948.1	AOT69025.1	Gferi_04890	Gferi_05305	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.583
AOT68948.1	AOT69063.1	Gferi_04890	Gferi_05515	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AOT68948.1	AOT69298.1	Gferi_04890	Gferi_06770	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AOT68948.1	AOT69299.1	Gferi_04890	Gferi_06775	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AOT68948.1	AOT69854.1	Gferi_04890	Gferi_09850	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AOT68948.1	AOT70788.1	Gferi_04890	Gferi_15205	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AOT68948.1	AOT70814.1	Gferi_04890	Gferi_15375	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AOT68948.1	AOT71629.1	Gferi_04890	Gferi_20075	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOT68948.1	AOT71630.1	Gferi_04890	Gferi_20080	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AOT68948.1	AOT72016.1	Gferi_04890	Gferi_22235	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
AOT68948.1	AOT72017.1	Gferi_04890	Gferi_22240	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AOT68948.1	AOT72021.1	Gferi_04890	Gferi_22270	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AOT68948.1	AOT72999.1	Gferi_04890	Gferi_04895	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AOT68948.1	AOT73008.1	Gferi_04890	Gferi_05520	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AOT68948.1	AOT73149.1	Gferi_04890	Gferi_15210	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
AOT69024.1	AOT68948.1	Gferi_05300	Gferi_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.596
AOT69024.1	AOT69025.1	Gferi_05300	Gferi_05305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983
AOT69024.1	AOT72999.1	Gferi_05300	Gferi_04895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AOT69025.1	AOT68948.1	Gferi_05305	Gferi_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NHLP bacteriocin export ABC transporter permease/ATPase subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.583