(13 nodes) Mixed, incl. Siroheme decarboxylase , AsnC-like ligand binding domain, and Cytochrome D1 heme domain network (Magnetospirillum gryphiswaldense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDK98606.1	Homologs of previously reported genes of unknown function. (555 aa)
	CDK98607.1	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (375 aa)
	nirH	Protein nirH; Function of strongly homologous gene; enzyme. (161 aa)
	nirG	Protein nirG; Function of strongly homologous gene; enzyme. (148 aa)
	nirL	Protein nirL; Function of strongly homologous gene; regulator. (165 aa)
	nirD	Protein nirD; Function of strongly homologous gene; enzyme. (149 aa)
	nirF	Protein nirF; Function of strongly homologous gene; enzyme. (387 aa)
	nirC	Cytochrome c55X; Function of strongly homologous gene; enzyme. (104 aa)
	nirS	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (540 aa)
	norD	Protein norD; Function of strongly homologous gene; factor. (632 aa)
	norQ	Protein norQ; Function of strongly homologous gene; factor. (260 aa)
	norB	Nitric oxide reductase subunit B; Function of strongly homologous gene; enzyme; Belongs to the heme-copper respiratory oxidase family. (445 aa)
	norC	Nitric oxide reductase subunit C; Function of strongly homologous gene; enzyme. (149 aa)

Your Current Organism:

Magnetospirillum gryphiswaldense

NCBI taxonomy Id: 1430440
Other names: M. gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense str. MSR-1 v2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK98606.1	CDK98607.1	MGMSRv2__1391	MGMSRv2__1392	Homologs of previously reported genes of unknown function.	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.980
CDK98606.1	nirC	MGMSRv2__1391	MGMSRv2__1398	Homologs of previously reported genes of unknown function.	Cytochrome c55X; Function of strongly homologous gene; enzyme.	0.994
CDK98606.1	nirD	MGMSRv2__1391	MGMSRv2__1396	Homologs of previously reported genes of unknown function.	Protein nirD; Function of strongly homologous gene; enzyme.	0.986
CDK98606.1	nirF	MGMSRv2__1391	MGMSRv2__1397	Homologs of previously reported genes of unknown function.	Protein nirF; Function of strongly homologous gene; enzyme.	0.979
CDK98606.1	nirG	MGMSRv2__1391	MGMSRv2__1394	Homologs of previously reported genes of unknown function.	Protein nirG; Function of strongly homologous gene; enzyme.	0.991
CDK98606.1	nirH	MGMSRv2__1391	MGMSRv2__1393	Homologs of previously reported genes of unknown function.	Protein nirH; Function of strongly homologous gene; enzyme.	0.988
CDK98606.1	nirL	MGMSRv2__1391	MGMSRv2__1395	Homologs of previously reported genes of unknown function.	Protein nirL; Function of strongly homologous gene; regulator.	0.986
CDK98606.1	nirS	MGMSRv2__1391	MGMSRv2__1403	Homologs of previously reported genes of unknown function.	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.743
CDK98606.1	norB	MGMSRv2__1391	MGMSRv2__1716	Homologs of previously reported genes of unknown function.	Nitric oxide reductase subunit B; Function of strongly homologous gene; enzyme; Belongs to the heme-copper respiratory oxidase family.	0.991
CDK98606.1	norC	MGMSRv2__1391	MGMSRv2__1717	Homologs of previously reported genes of unknown function.	Nitric oxide reductase subunit C; Function of strongly homologous gene; enzyme.	0.868
CDK98606.1	norD	MGMSRv2__1391	MGMSRv2__1714	Homologs of previously reported genes of unknown function.	Protein norD; Function of strongly homologous gene; factor.	0.679
CDK98606.1	norQ	MGMSRv2__1391	MGMSRv2__1715	Homologs of previously reported genes of unknown function.	Protein norQ; Function of strongly homologous gene; factor.	0.441
CDK98607.1	CDK98606.1	MGMSRv2__1392	MGMSRv2__1391	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Homologs of previously reported genes of unknown function.	0.980
CDK98607.1	nirC	MGMSRv2__1392	MGMSRv2__1398	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Cytochrome c55X; Function of strongly homologous gene; enzyme.	0.975
CDK98607.1	nirD	MGMSRv2__1392	MGMSRv2__1396	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Protein nirD; Function of strongly homologous gene; enzyme.	0.974
CDK98607.1	nirF	MGMSRv2__1392	MGMSRv2__1397	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Protein nirF; Function of strongly homologous gene; enzyme.	0.974
CDK98607.1	nirG	MGMSRv2__1392	MGMSRv2__1394	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Protein nirG; Function of strongly homologous gene; enzyme.	0.981
CDK98607.1	nirH	MGMSRv2__1392	MGMSRv2__1393	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Protein nirH; Function of strongly homologous gene; enzyme.	0.978
CDK98607.1	nirL	MGMSRv2__1392	MGMSRv2__1395	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Protein nirL; Function of strongly homologous gene; regulator.	0.974
CDK98607.1	nirS	MGMSRv2__1392	MGMSRv2__1403	Putative Coenzyme PQQ synthesis protein E (putative nirJ); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Nitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.828