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hycD hycD ppc ppc CDK97369.1 CDK97369.1 dmsB dmsB dmsC dmsC kamA kamA CDK97488.1 CDK97488.1 glgB glgB glgX glgX CDK97762.1 CDK97762.1 ctaD ctaD CDK97954.1 CDK97954.1 glgC glgC glgA glgA CDK98188.1 CDK98188.1 CDK98524.1 CDK98524.1 nuoN nuoN CDK98530.1 CDK98530.1 CDK98531.1 CDK98531.1 nuoK nuoK nuoI nuoI nuoH nuoH nuoG nuoG nuoE nuoE gltA gltA CDK98584.1 CDK98584.1 CDK98622.1 CDK98622.1 ubiE ubiE CDK98767.1 CDK98767.1 fumC fumC acnA acnA norB norB CDK98969.1 CDK98969.1 CDK99027.1 CDK99027.1 CDK99071.1 CDK99071.1 CDK99081.1 CDK99081.1 napB napB napG napG CDK99369.1 CDK99369.1 hupU hupU hupV hupV hupS hupS hybA hybA hybB hybB hupL hupL hupK hupK sdhB sdhB sdhA sdhA sdhD sdhD sdhC sdhC hyfG hyfG hyfF hyfF hyfE hyfE hyfB hyfB ubiE-2 ubiE-2 fixP fixP fixN fixN CDL00244.1 CDL00244.1 acnB acnB CDL00732.1 CDL00732.1 sucA sucA sucD sucD sucC sucC mdh mdh CDL01074.1 CDL01074.1 CDL01116.1 CDL01116.1 nrfC nrfC CDL01178.1 CDL01178.1 CDL01185.1 CDL01185.1 cydB cydB cydA cydA icd icd hyaC hyaC CDL01364.1 CDL01364.1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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hycDMembrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (315 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (933 aa)
CDK97369.1Putative Anaerobic dimethyl sulfoxide reductase chain A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (964 aa)
dmsBAnaerobic dimethyl sulfoxide reductase chain B; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (244 aa)
dmsCDMSO reductase anchor subunit; Function of strongly homologous gene; putative enzyme. (322 aa)
kamALysine 2,3-aminomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (353 aa)
CDK97488.1Homologs of previously reported genes of unknown function. (424 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (731 aa)
glgXGlycogen debranching enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 13 family. (709 aa)
CDK97762.1Cytochrome c oxidase subunit III; Function of strongly homologous gene; enzyme. (264 aa)
ctaDCytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (526 aa)
CDK97954.1Homologs of previously reported genes of unknown function. (227 aa)
glgCGlucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase); Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (424 aa)
glgAGlycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (486 aa)
CDK98188.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (155 aa)
CDK98524.1Putative F420-non-reducing hydrogenase vhc subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (430 aa)
nuoNNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (486 aa)
CDK98530.1Putative NADH:ubiquinone oxidoreductase, membrane subunit M; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (504 aa)
CDK98531.1Putative NADH:ubiquinone oxidoreductase, membrane subunit L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (644 aa)
nuoKPutative NADH:ubiquinone oxidoreductase, membrane subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (103 aa)
nuoINADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoHNADH:ubiquinone oxidoreductase, membrane subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (340 aa)
nuoGNADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (691 aa)
nuoENADH dehydrogenase I chain E; Function of strongly homologous gene; enzyme. (201 aa)
gltACitrate synthase; Function of strongly homologous gene; enzyme; Belongs to the citrate synthase family. (432 aa)
CDK98584.1Cytochrome c oxidase, subunit III; Function of strongly homologous gene; enzyme. (196 aa)
CDK98622.1Putative Permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (421 aa)
ubiEUbiquinone/menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (240 aa)
CDK98767.1Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (534 aa)
fumCFumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (467 aa)
acnAAconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (900 aa)
norBNitric oxide reductase subunit B; Function of strongly homologous gene; enzyme; Belongs to the heme-copper respiratory oxidase family. (445 aa)
CDK98969.1Putative formate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (928 aa)
CDK99027.1Putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (256 aa)
CDK99071.1Putative molybdopterin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (723 aa)
CDK99081.1Putative Glycogen debranching enzyme, amylo-alpha-1,6-glucosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (656 aa)
napBNitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (148 aa)
napGFerredoxin-type protein napG homolog; Function of homologous gene experimentally demonstrated in an other organism; carrier. (266 aa)
CDK99369.1Diheme cytochrome c; Function of strongly homologous gene; factor. (159 aa)
hupUUptake hydrogenase accessory protein HupU; Function of strongly homologous gene; enzyme. (342 aa)
hupVUptake hydrogenase accessory protein HupV; Function of strongly homologous gene; enzyme. (471 aa)
hupSUptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (373 aa)
hybAHydrogenase-2 operon protein hybA; Function of strongly homologous gene; carrier. (327 aa)
hybBFunction of strongly homologous gene; carrier. (394 aa)
hupLUptake hydrogenase large subunit precursor; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (568 aa)
hupKHydrogenase expression/formation protein HupK; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (381 aa)
sdhBSuccinate dehydrogenase, Fe-S protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (593 aa)
sdhDSuccinate dehydrogenase hydrophobic membrane anchor protein; Function of strongly homologous gene; membrane component. (127 aa)
sdhCSuccinate dehydrogenase cytochrome b556 subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (126 aa)
hyfGHydrogenase 4, subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (505 aa)
hyfFHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (497 aa)
hyfEHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (221 aa)
hyfBHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (668 aa)
ubiE-2Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (253 aa)
fixPCytochrome c oxidase, cbb3-type, FixP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (291 aa)
fixNCytochrome c oxidase subunit 1 homolog, bacteroid; Function of strongly homologous gene; transporter; Belongs to the heme-copper respiratory oxidase family. (483 aa)
CDL00244.1Putative electron transfer flavoprotein dehydrogenases; Accepts electrons from ETF and reduces ubiquinone. (534 aa)
acnBAconitate hydratase 2; Function experimentally demonstrated in the studied species; enzyme; Belongs to the aconitase/IPM isomerase family. (861 aa)
CDL00732.1Putative Oligoketide cyclase/lipid transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (141 aa)
sucA2-oxoglutarate dehydrogenase E1 component; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (987 aa)
sucDsuccinyl-CoA synthetase, alpha subunit, NAD(P)-binding; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (291 aa)
sucCsuccinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (398 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (318 aa)
CDL01074.1Putative Ni/Fe-hydrogenase B-type cytochrome subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (216 aa)
CDL01116.1Molybdopterin oxidoreductase, membrane subunit; Function of strongly homologous gene; enzyme. (396 aa)
nrfCFormate-dependent nitrite reductase, 4Fe4S subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (243 aa)
CDL01178.1Putative integral inner membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (140 aa)
CDL01185.1Homologs of previously reported genes of unknown function. (36 aa)
cydBCytochrome d ubiquinol oxidase subunit 2; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (382 aa)
cydACytochrome d terminal oxidase, subunit I; Function of homologous gene experimentally demonstrated in an other organism; carrier. (518 aa)
icdIsocitrate dehydrogenase [NADP]; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (405 aa)
hyaCHydrogenase 1, b-type cytochrome subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (227 aa)
CDL01364.1Putative Cytochrome B561; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (179 aa)
Your Current Organism:
Magnetospirillum gryphiswaldense
NCBI taxonomy Id: 1430440
Other names: M. gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense str. MSR-1 v2
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