STRINGSTRING
hyfF hyfF dmsC dmsC CDK97488.1 CDK97488.1 CDK97566.1 CDK97566.1 fixB fixB fixA fixA yedZ yedZ CDK97762.1 CDK97762.1 ctaD ctaD CDK97765.1 CDK97765.1 CDK97767.1 CDK97767.1 CDK97770.1 CDK97770.1 CDK97940.1 CDK97940.1 iorA iorA CDK97988.1 CDK97988.1 azoR azoR CDK98272.1 CDK98272.1 fixA-2 fixA-2 fixB-2 fixB-2 CDK98427.1 CDK98427.1 CDK98473.1 CDK98473.1 CDK98524.1 CDK98524.1 nuoN nuoN CDK98530.1 CDK98530.1 CDK98531.1 CDK98531.1 nuoK nuoK CDK98533.1 CDK98533.1 nuoG nuoG nqo1 nqo1 nuoE nuoE nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA CDK98584.1 CDK98584.1 fdxB-2 fdxB-2 CDK98606.1 CDK98606.1 nirC nirC nirS nirS CDK98621.1 CDK98621.1 CDK98622.1 CDK98622.1 CDK98643.1 CDK98643.1 CDK98644.1 CDK98644.1 CDK98645.1 CDK98645.1 CDK98650.1 CDK98650.1 CDK98765.1 CDK98765.1 CDK98767.1 CDK98767.1 etfA etfA CDK98771.1 CDK98771.1 norB norB norC norC CDK98963.1 CDK98963.1 CDK98969.1 CDK98969.1 nuoF nuoF hyfE hyfE CDK99301.1 CDK99301.1 CDK99363.1 CDK99363.1 CDK99367.1 CDK99367.1 shp shp CDK99369.1 CDK99369.1 hupU hupU hupV hupV hycD hycD hupS hupS hupL hupL hupK hupK sdhB sdhB sdhA sdhA sdhC sdhC mamZ mamZ mamE mamE yhjA yhjA hycG hycG hyfG hyfG CDK97369.1 CDK97369.1 CDL01370.1 CDL01370.1 CDL01364.1 CDL01364.1 hyaC hyaC CDL01314.1 CDL01314.1 cydA cydA cydB cydB CDL01178.1 CDL01178.1 etfB etfB etfA-2 etfA-2 dsrB dsrB CDL01074.1 CDL01074.1 CDL00740.1 CDL00740.1 CDL00490.1 CDL00490.1 CDL00483.1 CDL00483.1 ccp ccp CDL00339.1 CDL00339.1 CDL00244.1 CDL00244.1 fixN fixN ccoO ccoO fixP fixP CDL00047.1 CDL00047.1 CDL00042.1 CDL00042.1 igaA igaA CDK99908.1 CDK99908.1 hyfB hyfB CDK98971.1 CDK98971.1 CDK99051.1 CDK99051.1 CDK99071.1 CDK99071.1 napA napA CDK99298.1 CDK99298.1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hyfFHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (497 aa)
dmsCDMSO reductase anchor subunit; Function of strongly homologous gene; putative enzyme. (322 aa)
CDK97488.1Homologs of previously reported genes of unknown function. (424 aa)
CDK97566.1Ferredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier. (127 aa)
fixBElectron transfer flavoprotein, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (368 aa)
fixAElectron transfer flavoprotein, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (284 aa)
yedZSulfoxide reductase heme-binding subunit yedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalyti [...] (194 aa)
CDK97762.1Cytochrome c oxidase subunit III; Function of strongly homologous gene; enzyme. (264 aa)
ctaDCytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (526 aa)
CDK97765.1Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (269 aa)
CDK97767.1Cytochrome c553; Function of strongly homologous gene; enzyme. (102 aa)
CDK97770.1Conserved protein of unknown function,containing cytochrome c domain; Homologs of previously reported genes of unknown function. (224 aa)
CDK97940.1Putative Indolepyruvate oxidoreductase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (208 aa)
iorAIndolepyruvate oxidoreductase subunit iorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (619 aa)
CDK97988.1Putative cytochrome c-type biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (234 aa)
azoRFMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (204 aa)
CDK98272.1Homologs of previously reported genes of unknown function. (154 aa)
fixA-2Protein fixA; Function of strongly homologous gene; carrier. (278 aa)
fixB-2Protein FixB; Function of strongly homologous gene; carrier. (366 aa)
CDK98427.1Homologs of previously reported genes of unknown function. (148 aa)
CDK98473.1Putative cytochrome subunit of sulfide dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (101 aa)
CDK98524.1Putative F420-non-reducing hydrogenase vhc subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (430 aa)
nuoNNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (486 aa)
CDK98530.1Putative NADH:ubiquinone oxidoreductase, membrane subunit M; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (504 aa)
CDK98531.1Putative NADH:ubiquinone oxidoreductase, membrane subunit L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (644 aa)
nuoKPutative NADH:ubiquinone oxidoreductase, membrane subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (103 aa)
CDK98533.1Putative NADH:ubiquinone oxidoreductase, membrane subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (203 aa)
nuoGNADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (691 aa)
nqo1NADH-quinone oxidoreductase chain 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (426 aa)
nuoENADH dehydrogenase I chain E; Function of strongly homologous gene; enzyme. (201 aa)
nuoDNADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (392 aa)
nuoCNADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (200 aa)
nuoBNADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (193 aa)
nuoANADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (121 aa)
CDK98584.1Cytochrome c oxidase, subunit III; Function of strongly homologous gene; enzyme. (196 aa)
fdxB-22Fe-2S ferredoxin; Function of strongly homologous gene; carrier. (112 aa)
CDK98606.1Homologs of previously reported genes of unknown function. (555 aa)
nirCCytochrome c55X; Function of strongly homologous gene; enzyme. (104 aa)
nirSNitrite reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (540 aa)
CDK98621.1Homologs of previously reported genes of unknown function. (137 aa)
CDK98622.1Putative Permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (421 aa)
CDK98643.1Putative Cytochrome c4; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (255 aa)
CDK98644.1Putative Cytochrome c4; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (199 aa)
CDK98645.1Putative Nitrous-oxide reductase,nosZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (764 aa)
CDK98650.1Conserved exported protein of unknown function, containing cytochrome c domain; Homologs of previously reported genes of unknown function. (244 aa)
CDK98765.1Putative indolepyruvate oxidoreductase subunit iorA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1134 aa)
CDK98767.1Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (534 aa)
etfAElectron transfer flavoprotein (alpha subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (308 aa)
CDK98771.1Putative electron transfer flavoprotein (beta subunit); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (248 aa)
norBNitric oxide reductase subunit B; Function of strongly homologous gene; enzyme; Belongs to the heme-copper respiratory oxidase family. (445 aa)
norCNitric oxide reductase subunit C; Function of strongly homologous gene; enzyme. (149 aa)
CDK98963.1Conserved protein of unknown function, containing Cytochrome c domain; Homologs of previously reported genes of unknown function. (124 aa)
CDK98969.1Putative formate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (928 aa)
nuoFNADH-quinone oxidoreductase subunit F, NuoF; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (511 aa)
hyfEHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (221 aa)
CDK99301.1Putative sulfur oxidation protein (SoxA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (270 aa)
CDK99363.1Putative ETC complex I subunit conserved region protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (102 aa)
CDK99367.1Putative Cytochrome B561; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (152 aa)
shpCytochrome c-type protein SHP; Function of homologous gene experimentally demonstrated in an other organism; transporter. (135 aa)
CDK99369.1Diheme cytochrome c; Function of strongly homologous gene; factor. (159 aa)
hupUUptake hydrogenase accessory protein HupU; Function of strongly homologous gene; enzyme. (342 aa)
hupVUptake hydrogenase accessory protein HupV; Function of strongly homologous gene; enzyme. (471 aa)
hycDMembrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (315 aa)
hupSUptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (373 aa)
hupLUptake hydrogenase large subunit precursor; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (568 aa)
hupKHydrogenase expression/formation protein HupK; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (381 aa)
sdhBSuccinate dehydrogenase, Fe-S protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (593 aa)
sdhCSuccinate dehydrogenase cytochrome b556 subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (126 aa)
mamZmamZ (mamH-like); Required for correct biomineralization of the magnetosome; probably converts and then transports some form of iron. It is partially functionally redundant with MamH. May function with MamX, MamY amd Mms6 in biomineralization (Probable). Despite its strong similarity to MsrQ (AC V6EX82) this protein does not genetically interact with bona fide MsrP (AC V6F0A4), which is encoded elsewhere in the genome. (648 aa)
mamEMagnetosome formation protease MamE; Acts at 2 distinct steps of magnetosome formation; required for correct localization of proteins to the magnetosome while the protease activity is required for maturation of small magnetite crystals into larger, functional ones (By similarity). Probably cleaves at least itself, MamO and MamP; cleavage requires the putative transprot domain of MamO (By similarity). Involved in localization of some proteins (at least MamA, MamC, MamF, MamI and MamJ) to the magnetosome (By similarity). One of 7 genes (mamLQBIEMO) able to induce magnetosome membrane bio [...] (772 aa)
yhjACytochrome C peroxidase (cpp-like); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (327 aa)
hycGHydrogenase 3 and formate hydrogenase complex, HycG subunit; Function of strongly homologous gene; enzyme. (176 aa)
hyfGHydrogenase 4, subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (505 aa)
CDK97369.1Putative Anaerobic dimethyl sulfoxide reductase chain A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (964 aa)
CDL01370.1Cytochrome c2 iso-2; Function of homologous gene experimentally demonstrated in an other organism; factor. (120 aa)
CDL01364.1Putative Cytochrome B561; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (179 aa)
hyaCHydrogenase 1, b-type cytochrome subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (227 aa)
CDL01314.1Function of homologous gene experimentally demonstrated in an other organism; transporter. (152 aa)
cydACytochrome d terminal oxidase, subunit I; Function of homologous gene experimentally demonstrated in an other organism; carrier. (518 aa)
cydBCytochrome d ubiquinol oxidase subunit 2; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (382 aa)
CDL01178.1Putative integral inner membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (140 aa)
etfBElectron transfer flavoprotein subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (248 aa)
etfA-2Electron transfer flavoprotein (alpha subunit); Function of strongly homologous gene; enzyme. (311 aa)
dsrBSulfite reductase, dissimilatory-type subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (356 aa)
CDL01074.1Putative Ni/Fe-hydrogenase B-type cytochrome subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (216 aa)
CDL00740.1Homologs of previously reported genes of unknown function. (86 aa)
CDL00490.1Putative Cytochrome c domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier. (140 aa)
CDL00483.1Putative Cytochrome c-552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (101 aa)
ccpCytochrome c551 peroxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (328 aa)
CDL00339.1Ferredoxin-2; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
CDL00244.1Putative electron transfer flavoprotein dehydrogenases; Accepts electrons from ETF and reduces ubiquinone. (534 aa)
fixNCytochrome c oxidase subunit 1 homolog, bacteroid; Function of strongly homologous gene; transporter; Belongs to the heme-copper respiratory oxidase family. (483 aa)
ccoOCytochrome C oxidase, mono-heme subunit/FixO; Function of strongly homologous gene; carrier. (243 aa)
fixPCytochrome c oxidase, cbb3-type, FixP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (291 aa)
CDL00047.1Putative Cytochrome c domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (237 aa)
CDL00042.1Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (184 aa)
igaAIntracellular growth attenuator protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (229 aa)
CDK99908.1Cytochrome c-551; Function of homologous gene experimentally demonstrated in an other organism; structure. (107 aa)
hyfBHydrogenase 4, membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; membrane component. (668 aa)
CDK98971.1Putative NADH-quinone oxidoreductase subunit E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (152 aa)
CDK99051.1Putative tryptophan repressor-binding protein wrbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (188 aa)
CDK99071.1Putative molybdopterin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (723 aa)
napAPeriplasmic nitrate reductase, large subunit (NapA); Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (835 aa)
CDK99298.1Putative cytochrome c domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (150 aa)
Your Current Organism:
Magnetospirillum gryphiswaldense
NCBI taxonomy Id: 1430440
Other names: M. gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense MSR-1 v2, Magnetospirillum gryphiswaldense str. MSR-1 v2
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