(53 nodes) Mixed, incl. U2 snRNP, and Prp19 complex network (Rhizophagus irregularis DAOM)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RirG_229170	Prp9p. (484 aa)
	RirG_253490	Cwc2p. (359 aa)
	RirG_196370	Rds3p. (110 aa)
	RirG_219780	Prp22p. (1052 aa)
	RirG_190210	Rse1p. (1198 aa)
	RirG_185540	Prp46p. (524 aa)
	RirG_184020	Bud13p. (326 aa)
	RirG_178840	Prp22p. (1126 aa)
	RirG_169010	Msl1p. (256 aa)
	RirG_166110	Splicing factor subunit; Belongs to the SF3B5 family. (83 aa)
	RirG_251350	Prp45p. (551 aa)
	RirG_251090	Mrd1p. (124 aa)
	RirG_091590	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (116 aa)
	RirG_097600	U1-type domain-containing protein. (447 aa)
	RirG_075300	Cus1p. (634 aa)
	RirG_074760	Small nuclear ribonucleoprotein Sm D2. (114 aa)
	RirG_094490	Bud31p. (202 aa)
	RirG_073950	Cwc24p. (337 aa)
	RirG_065090	Uncharacterized protein. (237 aa)
	RirG_062580	E3 ubiquitin-protein ligase PRP19. (508 aa)
	RirG_264670	Isy1p. (256 aa)
	RirG_063230	Prp11p. (256 aa)
	RirG_023090	DUF1716 domain-containing protein. (663 aa)
	RirG_019870	Cdc40p. (650 aa)
	RirG_018150	Uncharacterized protein. (776 aa)
	RirG_036240	Small nuclear ribonucleoprotein G. (76 aa)
	RirG_035830	DEAH-box RNA helicase PRP16. (1322 aa)
	RirG_015340	Uncharacterized protein. (204 aa)
	RirG_010380	Uncharacterized protein. (72 aa)
	RirG_019300	Cwf21 domain-containing protein. (516 aa)
	RirG_191700	Syf1p. (840 aa)
	RirG_190250	Small nuclear ribonucleoprotein-associated protein. (284 aa)
	RirG_186520	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1483 aa)
	RirG_163770	CPSF_A domain-containing protein. (1401 aa)
	RirG_071850	Ist3p. (369 aa)
	RirG_051200	Clf1p. (683 aa)
	RirG_039610	Lea1p. (257 aa)
	RirG_098260	Cef1p. (696 aa)
	RirG_094020	Small nuclear ribonucleoprotein Sm D3. (130 aa)
	RirG_085980	Nam8p. (354 aa)
	RirG_019290	Msl1p. (280 aa)
	RirG_018380	Cwc22p. (573 aa)
	RirG_000340	Uncharacterized protein. (104 aa)
	RirG_032980	Smx3p. (85 aa)
	RirG_196230	Hsh49p. (337 aa)
	RirG_017800	Uncharacterized protein. (802 aa)
	RirG_016450	Pml1p. (348 aa)
	RirG_012630	Peptidylprolyl isomerase CPR2. (576 aa)
	RirG_122330	Hsh49p. (149 aa)
	RirG_092550	Uncharacterized protein. (238 aa)
	RirG_077620	Hsh155p. (1148 aa)
	RirG_075190	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (85 aa)
	RirG_067770	Cir_N domain-containing protein. (443 aa)

Your Current Organism:

Rhizophagus irregularis DAOM

NCBI taxonomy Id: 1432141
Other names: R. irregularis DAOM 197198w, Rhizophagus irregularis DAOM 197198w, Rhizophagus irregularis DAOM197198w

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RirG_000340	RirG_012630	A0A015LJP8	A0A015M180	Uncharacterized protein.	Peptidylprolyl isomerase CPR2.	0.711
RirG_000340	RirG_015340	A0A015LJP8	A0A015K9E2	Uncharacterized protein.	Uncharacterized protein.	0.747
RirG_000340	RirG_017800	A0A015LJP8	A0A015LZH1	Uncharacterized protein.	Uncharacterized protein.	0.928
RirG_000340	RirG_018380	A0A015LJP8	A0A015LED7	Uncharacterized protein.	Cwc22p.	0.983
RirG_000340	RirG_019290	A0A015LJP8	A0A015LE01	Uncharacterized protein.	Msl1p.	0.704
RirG_000340	RirG_019300	A0A015LJP8	A0A015KE86	Uncharacterized protein.	Cwf21 domain-containing protein.	0.931
RirG_000340	RirG_019870	A0A015LJP8	A0A015K805	Uncharacterized protein.	Cdc40p.	0.983
RirG_000340	RirG_032980	A0A015LJP8	A0A015LUS6	Uncharacterized protein.	Smx3p.	0.851
RirG_000340	RirG_035830	A0A015LJP8	A0A015K9D6	Uncharacterized protein.	DEAH-box RNA helicase PRP16.	0.966
RirG_000340	RirG_036240	A0A015LJP8	A0A015K980	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.818
RirG_000340	RirG_039610	A0A015LJP8	A0A015L7P5	Uncharacterized protein.	Lea1p.	0.837
RirG_000340	RirG_051200	A0A015LJP8	A0A015L3X8	Uncharacterized protein.	Clf1p.	0.962
RirG_000340	RirG_062580	A0A015LJP8	A0A015JUD7	Uncharacterized protein.	E3 ubiquitin-protein ligase PRP19.	0.940
RirG_000340	RirG_065090	A0A015LJP8	A0A015JTI5	Uncharacterized protein.	Uncharacterized protein.	0.631
RirG_000340	RirG_067770	A0A015LJP8	A0A015N0L9	Uncharacterized protein.	Cir_N domain-containing protein.	0.906
RirG_000340	RirG_071850	A0A015LJP8	A0A015KX81	Uncharacterized protein.	Ist3p.	0.418
RirG_000340	RirG_074760	A0A015LJP8	A0A015JQR0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.851
RirG_000340	RirG_075190	A0A015LJP8	A0A015MYC2	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.839
RirG_000340	RirG_075300	A0A015LJP8	A0A015JQM4	Uncharacterized protein.	Cus1p.	0.939
RirG_000340	RirG_085980	A0A015LJP8	A0A015LDL6	Uncharacterized protein.	Nam8p.	0.898