(40 nodes) Mixed, incl. Spliceosomal tri-snRNP complex, and Microfibrillar-associated protein 1 network (Rhizophagus irregularis DAOM)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RirG_271340	Lsm7p. (156 aa)
	RirG_266550	Lsm7p. (126 aa)
	RirG_181410	Prp8p. (2380 aa)
	RirG_190240	Prp24p. (1066 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	RirG_161250	Uncharacterized protein. (114 aa)
	RirG_136690	Uncharacterized protein. (480 aa)
	RirG_231400	Matrin-type domain-containing protein. (224 aa)
	RirG_091690	Sad1p. (491 aa)
	RirG_213070	Cop1p. (519 aa)
	RirG_078000	Hub1p. (102 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	RirG_253260	Uncharacterized protein. (208 aa)
	RirG_175680	DPBB_1 domain-containing protein. (125 aa)
	RirG_174590	Pat1p. (774 aa)
	RirG_055570	Uncharacterized protein. (463 aa)
	RirG_166100	Prp4p. (538 aa)
	RirG_161240	MFAP1 domain-containing protein. (59 aa)
	RirG_213500	Eft1p. (1024 aa)
	RirG_193600	MFAP1 domain-containing protein. (431 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (133 aa)
	RirG_148090	Uncharacterized protein. (565 aa)
	RirG_036700	Uncharacterized protein. (493 aa)
	RirG_049940	Tup1p. (457 aa)
	RirG_034400	DPBB_1 domain-containing protein. (76 aa)
	RirG_032660	Rsa4p. (346 aa)
	RirG_030950	Yak1p. (890 aa)
	RirG_195450	Prp6p. (893 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (138 aa)
	RirG_181160	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	RirG_013360	Lsm6p. (80 aa)
	RirG_176230	Brr2p. (2198 aa)
	RirG_159650	Snu66p. (616 aa)
	RirG_153660	Prp31p. (506 aa)
	RirG_103290	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (142 aa)
	RirG_073960	Dbp2p. (106 aa)
	RirG_052400	Prp3p. (619 aa)
	RirG_042780	SNRNP27 domain-containing protein. (226 aa)
	RirG_018610	Uncharacterized protein. (223 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)

Your Current Organism:

Rhizophagus irregularis DAOM

NCBI taxonomy Id: 1432141
Other names: R. irregularis DAOM 197198w, Rhizophagus irregularis DAOM 197198w, Rhizophagus irregularis DAOM197198w

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM3	A0A015M072	A0A015NFC7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	LSM4	A0A015M072	A0A015KMV0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	LSM5	A0A015M072	A0A015JV38	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM1	LSM8	A0A015M072	A0A015J1T6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
LSM1	RirG_013360	A0A015M072	A0A015M122	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Lsm6p.	0.999
LSM1	RirG_036700	A0A015M072	A0A015L8M4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.954
LSM1	RirG_055570	A0A015M072	A0A015K2T7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.954
LSM1	RirG_073960	A0A015M072	A0A015MYR9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Dbp2p.	0.643
LSM1	RirG_166100	A0A015M072	A0A015K3G7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Prp4p.	0.402
LSM1	RirG_174590	A0A015M072	A0A015K0W1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Pat1p.	0.999
LSM1	RirG_181160	A0A015M072	A0A015M079	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	RirG_190240	A0A015M072	A0A015IY32	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Prp24p.	0.435
LSM1	RirG_266550	A0A015M072	A0A015IAR2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Lsm7p.	0.984
LSM1	RirG_271340	A0A015M072	A0A015I9B5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Lsm7p.	0.984
LSM3	LSM1	A0A015NFC7	A0A015M072	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
LSM3	LSM4	A0A015NFC7	A0A015KMV0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A015NFC7	A0A015JV38	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A015NFC7	A0A015J1T6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	RirG_013360	A0A015NFC7	A0A015M122	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Lsm6p.	0.999
LSM3	RirG_018610	A0A015NFC7	A0A015NFA3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.707