(26 nodes) Mixed, incl. mRNA splice site selection, and Nuclear cap binding complex network (Rhizophagus irregularis DAOM)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	RirG_252600	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (286 aa)
	RirG_212620	Nuclear cap-binding protein subunit 2. (219 aa)
	RirG_230110	Uncharacterized protein. (442 aa)
	RirG_192480	Uncharacterized protein. (80 aa)
	RirG_252590	Uncharacterized protein. (231 aa)
	RirG_117440	Snp1p. (361 aa)
	RirG_228510	PWI domain-containing protein. (493 aa)
	RirG_084330	Uncharacterized protein. (145 aa)
	RirG_058210	Luc7p. (297 aa)
	RirG_170500	Nam8p. (392 aa)
	RirG_228750	Cus2p. (383 aa)
	RirG_013150	Uncharacterized protein. (57 aa)
	RirG_173550	Msl5p. (563 aa)
	RirG_094360	Uncharacterized protein. (156 aa)
	RirG_129900	Prp39p. (384 aa)
	RirG_038980	Snp1p. (300 aa)
	RirG_100890	Uncharacterized protein. (331 aa)
	RirG_085020	Luc7p. (310 aa)
	RirG_077380	Uncharacterized protein. (96 aa)
	RirG_011750	SURP motif domain-containing protein. (169 aa)
	RirG_230500	Sto1p. (619 aa)
	RirG_225390	Pab1p. (471 aa)
	RirG_216430	Uncharacterized protein. (142 aa)
	RirG_192460	Uncharacterized protein. (66 aa)
	RirG_129540	Uncharacterized protein. (389 aa)
	RirG_084340	Uncharacterized protein. (60 aa)

Your Current Organism:

Rhizophagus irregularis DAOM

NCBI taxonomy Id: 1432141
Other names: R. irregularis DAOM 197198w, Rhizophagus irregularis DAOM 197198w, Rhizophagus irregularis DAOM197198w

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RirG_011750	RirG_013150	A0A015LGK7	A0A015KGA9	SURP motif domain-containing protein.	Uncharacterized protein.	0.670
RirG_011750	RirG_038980	A0A015LGK7	A0A015L7U5	SURP motif domain-containing protein.	Snp1p.	0.639
RirG_011750	RirG_058210	A0A015LGK7	A0A015K223	SURP motif domain-containing protein.	Luc7p.	0.447
RirG_011750	RirG_085020	A0A015LGK7	A0A015LDW1	SURP motif domain-containing protein.	Luc7p.	0.627
RirG_011750	RirG_094360	A0A015LGK7	A0A015KQ02	SURP motif domain-containing protein.	Uncharacterized protein.	0.552
RirG_011750	RirG_100890	A0A015LGK7	A0A015L8M5	SURP motif domain-containing protein.	Uncharacterized protein.	0.685
RirG_011750	RirG_117440	A0A015LGK7	A0A015JC75	SURP motif domain-containing protein.	Snp1p.	0.496
RirG_011750	RirG_129540	A0A015LGK7	A0A015MG96	SURP motif domain-containing protein.	Uncharacterized protein.	0.434
RirG_011750	RirG_129900	A0A015LGK7	A0A015L0E3	SURP motif domain-containing protein.	Prp39p.	0.529
RirG_011750	RirG_170500	A0A015LGK7	A0A015K2A3	SURP motif domain-containing protein.	Nam8p.	0.748
RirG_011750	RirG_173550	A0A015LGK7	A0A015KN53	SURP motif domain-containing protein.	Msl5p.	0.958
RirG_011750	RirG_212620	A0A015LGK7	A0A015II16	SURP motif domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.751
RirG_011750	RirG_228750	A0A015LGK7	A0A015K6J5	SURP motif domain-containing protein.	Cus2p.	0.768
RirG_011750	RirG_230110	A0A015LGK7	A0A015IL89	SURP motif domain-containing protein.	Uncharacterized protein.	0.847
RirG_011750	RirG_230500	A0A015LGK7	A0A015LJ81	SURP motif domain-containing protein.	Sto1p.	0.725
RirG_011750	RirG_252590	A0A015LGK7	A0A015JC37	SURP motif domain-containing protein.	Uncharacterized protein.	0.664
RirG_011750	RirG_252600	A0A015LGK7	A0A015IEQ8	SURP motif domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.664
RirG_013150	RirG_011750	A0A015KGA9	A0A015LGK7	Uncharacterized protein.	SURP motif domain-containing protein.	0.670
RirG_013150	RirG_038980	A0A015KGA9	A0A015L7U5	Uncharacterized protein.	Snp1p.	0.875
RirG_013150	RirG_058210	A0A015KGA9	A0A015K223	Uncharacterized protein.	Luc7p.	0.794