(6 nodes) Mixed, incl. Proton-conducting membrane transporter, and Multiple resistance and pH regulation protein F (MrpF / PhaF) network (Thermococcus guaymasensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJC71346.1	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJC71347.1	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AJC71350.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	AJC71351.1	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
	AJC71352.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
	AJC71353.1	Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)

Your Current Organism:

Thermococcus guaymasensis

NCBI taxonomy Id: 1432656
Other names: T. guaymasensis DSM 11113, Thermococcus guaymasensis DSM 11113

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC71346.1	AJC71347.1	X802_03590	X802_03595	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJC71346.1	AJC71350.1	X802_03590	X802_03610	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJC71346.1	AJC71351.1	X802_03590	X802_03615	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJC71346.1	AJC71352.1	X802_03590	X802_03620	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJC71346.1	AJC71353.1	X802_03590	X802_03625	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AJC71347.1	AJC71346.1	X802_03595	X802_03590	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJC71347.1	AJC71350.1	X802_03595	X802_03610	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJC71347.1	AJC71351.1	X802_03595	X802_03615	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJC71347.1	AJC71352.1	X802_03595	X802_03620	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AJC71347.1	AJC71353.1	X802_03595	X802_03625	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJC71350.1	AJC71346.1	X802_03610	X802_03590	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJC71350.1	AJC71347.1	X802_03610	X802_03595	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJC71350.1	AJC71351.1	X802_03610	X802_03615	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AJC71350.1	AJC71352.1	X802_03610	X802_03620	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJC71350.1	AJC71353.1	X802_03610	X802_03625	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AJC71351.1	AJC71346.1	X802_03615	X802_03590	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJC71351.1	AJC71347.1	X802_03615	X802_03595	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-ubiquinone oxidoreductase subunit 4L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJC71351.1	AJC71350.1	X802_03615	X802_03610	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AJC71351.1	AJC71352.1	X802_03615	X802_03620	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AJC71351.1	AJC71353.1	X802_03615	X802_03625	pH regulation protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916