STRINGSTRING
BN938_2259 BN938_2259 BN938_2282 BN938_2282 ilvD ilvD BN938_2334 BN938_2334 BN938_2351 BN938_2351 BN938_2353 BN938_2353 nfo nfo rpsB rpsB BN938_2393 BN938_2393 bioB bioB BN938_2413 BN938_2413 BN938_2418 BN938_2418 BN938_2437 BN938_2437 BN938_2439 BN938_2439 sbcD sbcD BN938_2588 BN938_2588 BN938_2594 BN938_2594 BN938_2724 BN938_2724 BN938_2733 BN938_2733 BN938_2746 BN938_2746 BN938_2750 BN938_2750 BN938_2816 BN938_2816 BN938_2819 BN938_2819 BN938_2822 BN938_2822 BN938_2838 BN938_2838 BN938_2842 BN938_2842 BN938_2845 BN938_2845 BN938_2850 BN938_2850 BN938_2884 BN938_2884 BN938_2893 BN938_2893 BN938_2933 BN938_2933 BN938_2946 BN938_2946 ispE ispE BN938_2977 BN938_2977 BN938_2979 BN938_2979 BN938_2980 BN938_2980 BN938_3000 BN938_3000 truA truA BN938_3034 BN938_3034 BN938_3049 BN938_3049 BN938_0062 BN938_0062 BN938_0042 BN938_0042 BN938_0018 BN938_0018 BN938_0004 BN938_0004 BN938_0003 BN938_0003 BN938_1980 BN938_1980 BN938_0079 BN938_0079 BN938_0147 BN938_0147 BN938_0150 BN938_0150 ychF ychF BN938_0193 BN938_0193 BN938_0194 BN938_0194 argC argC tadA tadA BN938_0271 BN938_0271 BN938_0367 BN938_0367 BN938_0373 BN938_0373 BN938_0547 BN938_0547 BN938_0556 BN938_0556 BN938_0727 BN938_0727 BN938_0794 BN938_0794 BN938_0797 BN938_0797 rpsD rpsD rpsM rpsM BN938_0922 BN938_0922 BN938_0928 BN938_0928 BN938_0955 BN938_0955 nadD nadD BN938_0974 BN938_0974 BN938_1009 BN938_1009 BN938_1026 BN938_1026 adk adk BN938_1108 BN938_1108 BN938_1140 BN938_1140 BN938_1149 BN938_1149 BN938_1173 BN938_1173 BN938_1176 BN938_1176 BN938_1207 BN938_1207 BN938_1214 BN938_1214 rplA rplA BN938_1311 BN938_1311 BN938_1320 BN938_1320 BN938_1341 BN938_1341 BN938_1347 BN938_1347 rpsL rpsL BN938_1370 BN938_1370 BN938_1371 BN938_1371 BN938_1428 BN938_1428 BN938_1433 BN938_1433 BN938_1445 BN938_1445 leuA leuA BN938_1530 BN938_1530 BN938_1537 BN938_1537 purD purD ybeY ybeY BN938_1628 BN938_1628 BN938_1655 BN938_1655 BN938_1659 BN938_1659 BN938_1717 BN938_1717 BN938_1752 BN938_1752 BN938_1834 BN938_1834 BN938_1873 BN938_1873 BN938_1880 BN938_1880 BN938_1894 BN938_1894 BN938_1915 BN938_1915 ubiX ubiX argB argB BN938_1942 BN938_1942 BN938_1947 BN938_1947 BN938_0070 BN938_0070 BN938_1996 BN938_1996 BN938_2022 BN938_2022 BN938_2026 BN938_2026 BN938_2054 BN938_2054 BN938_2058 BN938_2058 BN938_2088 BN938_2088 nth nth BN938_2208 BN938_2208 BN938_2212 BN938_2212 BN938_2221 BN938_2221 serC serC BN938_2227 BN938_2227 BN938_2232 BN938_2232 BN938_2241 BN938_2241
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN938_2259Hypothetical protein. (186 aa)
BN938_2282Formylglycine-generating sulphatase domain containing protein. (286 aa)
ilvDDihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (591 aa)
BN938_2334Ketol-acid reductoisomerase. (348 aa)
BN938_2351Transketolase, N-terminal section. (284 aa)
BN938_2353Beta-hexosaminidase. (503 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (280 aa)
rpsBSSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family. (271 aa)
BN938_2393Hypothetical protein. (385 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (318 aa)
BN938_2413RNA-binding region RNP-1. (92 aa)
BN938_24184-hydroxybutyrate coenzyme A transferase. (438 aa)
BN938_2437Retron-type RNA-directed DNA polymerase. (409 aa)
BN938_2439Retron-type RNA-directed DNA polymerase. (137 aa)
sbcDExonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (66 aa)
BN938_2588Cobalt-zinc-cadmium resistance protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (295 aa)
BN938_2594Aminopeptidase. (489 aa)
BN938_2724Ornithine cyclodeaminase. (315 aa)
BN938_2733UDP-glucose 4-epimerase. (324 aa)
BN938_2746Glutamine cyclotransferase. (348 aa)
BN938_2750Iron-sulfur cluster assembly protein SufB. (481 aa)
BN938_2816O-acetylhomoserine sulfhydrylase. (435 aa)
BN938_2819CDP-diacylglycerol-serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (217 aa)
BN938_2822Beta-hexosaminidase. (879 aa)
BN938_2838Aspartate aminotransferase. (400 aa)
BN938_2842Dihydroflavonol-4-reductase. (316 aa)
BN938_2845AAA ATPase. (412 aa)
BN938_2850Choline-sulfatase. (498 aa)
BN938_2884Prephenate dehydratase. (278 aa)
BN938_2893Quinolinate phosphoribosyltransferase [decarboxylating]; Belongs to the NadC/ModD family. (283 aa)
BN938_2933Hypothetical protein. (312 aa)
BN938_2946Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. (452 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (255 aa)
BN938_2977Hypothetical protein. (93 aa)
BN938_2979Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (352 aa)
BN938_2980Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosa mine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (262 aa)
BN938_3000Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. (474 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (240 aa)
BN938_3034Putative sodium-solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (556 aa)
BN938_3049Sodium-dependent phosphate transporter. (535 aa)
BN938_0062[FeFe]-hydrogenase maturation protein HydE. (332 aa)
BN938_0042Hypothetical protein. (1325 aa)
BN938_0018HIT family protein. (128 aa)
BN938_0004Electron transfer flavoprotein, alpha subunit. (337 aa)
BN938_0003Acyl-CoA dehydrogenase. (569 aa)
BN938_1980Riboflavin kinase. (229 aa)
BN938_0079Aminopeptidase C; Belongs to the peptidase C1 family. (387 aa)
BN938_0147Dipeptidyl peptidase IV. (711 aa)
BN938_0150MoxR-like ATPase in aerotolerance operon. (366 aa)
ychFGTP-binding and nucleic acid-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa)
BN938_0193Iron-sulfur cluster assembly protein SufD. (318 aa)
BN938_0194Iron-sulfur cluster assembly ATPase protein SufC. (252 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (327 aa)
tadAtRNA-specific adenosine-34 deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (141 aa)
BN938_0271N-acetyl-L,L-diaminopimelate deacetylase. (379 aa)
BN938_0367Retron-type RNA-directed DNA polymerase. (607 aa)
BN938_0373Retron-type RNA-directed DNA polymerase. (555 aa)
BN938_0547Retron-type RNA-directed DNA polymerase. (607 aa)
BN938_0556Retron-type RNA-directed DNA polymerase. (555 aa)
BN938_0727Alpha-L-fucosidase. (543 aa)
BN938_0794Putative aminopeptidase. (518 aa)
BN938_0797Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (133 aa)
rpsDSSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (202 aa)
rpsMSSU ribosomal protein S13p (S18e); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (126 aa)
BN938_0922NADH dehydrogenase. (416 aa)
BN938_0928O-acetylhomoserine sulfhydrylase. (418 aa)
BN938_0955Hypothetical protein. (396 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (247 aa)
BN938_0974LSU ribosomal protein L16p (L10e); Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (126 aa)
BN938_1009Hypothetical protein. (672 aa)
BN938_1026Thiol peroxidase, Bcp type. (151 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (192 aa)
BN938_1108Branched-chain amino acid aminotransferase. (344 aa)
BN938_1140Hypothetical protein. (310 aa)
BN938_1149Ubiquinone biosynthesis monooxygenase UbiB. (548 aa)
BN938_11732-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase. (155 aa)
BN938_1176Long-chain-fatty-acid--CoA ligase. (530 aa)
BN938_1207Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. (462 aa)
BN938_1214Single-stranded DNA-binding protein. (173 aa)
rplALSU ribosomal protein L1p (L10Ae); Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa)
BN938_1311Glutamate synthase [NADPH] large chain. (464 aa)
BN938_1320Putative Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (135 aa)
BN938_1341Long-chain-fatty-acid--CoA ligase. (550 aa)
BN938_1347NAD-dependent epimerase/dehydratase. (320 aa)
rpsLSSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (130 aa)
BN938_1370Aminopeptidase. (476 aa)
BN938_1371Hypothetical protein. (149 aa)
BN938_1428Hypothetical protein. (831 aa)
BN938_1433Choline-sulfatase. (498 aa)
BN938_1445Mucin-desulfating sulfatase. (513 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (502 aa)
BN938_1530Aspartokinase. (816 aa)
BN938_1537N-acetylglucosamine related transporter NagX. (364 aa)
purDPhosphoribosylamine--glycine ligase; Belongs to the GARS family. (434 aa)
ybeYMetal-dependent hydrolase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (136 aa)
BN938_1628Hypothetical protein. (676 aa)
BN938_1655Permease of the drug/metabolite transporter (DMT) superfamily. (300 aa)
BN938_1659Hypothetical protein. (252 aa)
BN938_1717Hypothetical protein. (1128 aa)
BN938_1752Hypothetical protein. (312 aa)
BN938_1834Reverse transcriptase. (286 aa)
BN938_1873Redox-active disulfide protein 2. (77 aa)
BN938_1880Methylated-DNA--protein-cysteine methyltransferase. (152 aa)
BN938_1894Beta-hexosaminidase. (649 aa)
BN938_19156-carboxytetrahydropterin synthase; Queuosine biosynthesis QueD PTPS-I. (152 aa)
ubiX3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (185 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (271 aa)
BN938_1942Metal-dependent hydrolase of the beta-lactamase superfamily I, PhnP protein. (253 aa)
BN938_1947Beta-hexosaminidase. (609 aa)
BN938_0070Deoxyadenosine kinase. (204 aa)
BN938_1996(R)-citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (502 aa)
BN938_2022Aminopeptidase. (295 aa)
BN938_2026Beta-hexosaminidase. (792 aa)
BN938_2054Hypothetical protein. (268 aa)
BN938_2058Predicted maltose transporter MalT. (423 aa)
BN938_2088Pyruvate kinase; Belongs to the pyruvate kinase family. (475 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (224 aa)
BN938_2208Alpha-L-fucosidase. (685 aa)
BN938_2212NAD-reducing hydrogenase subunit HoxE. (158 aa)
BN938_2221Cytosolic long-chain acyl-CoA thioester hydrolase family protein. (160 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (359 aa)
BN938_2227Fumarylacetoacetate hydrolase family protein. (202 aa)
BN938_2232V-type ATP synthase subunit C. (271 aa)
BN938_2241V-type ATP synthase subunit B. (436 aa)
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
Server load: low (24%) [HD]