(17 nodes) Mixed, incl. Heme transport, and Ribosomal RNA methyltransferase, FtsJ domain network (Methanococcoides methylutens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKB84870.1	Hypothetical protein. (105 aa)
	AKB84871.1	Phosphatidylethanolamine N-methyltransferase. (206 aa)
	AKB84872.1	TMAO/DMSO reductase. (206 aa)
	AKB84873.1	Hypothetical protein. (263 aa)
	AKB84874.1	Hypothetical protein. (136 aa)
	AKB85529.1	Hypothetical protein. (193 aa)
	AKB85530.1	Fibrillarin. (225 aa)
	AKB85531.1	2,4-dienoyl-CoA reductase [NADPH]. (364 aa)
	AKB85532.1	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE. (235 aa)
	AKB85533.1	ABC transporter involved in cytochrome c biogenesis, CcmB subunit. (224 aa)
	AKB85534.1	ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA. (242 aa)
	AKB85535.1	N-type ATP pyrophosphatase superfamily; TilS and TtcA-like. (302 aa)
	AKB85577.1	Cytochrome c-type biogenesis protein, archaeal, distantly related to heme lyase subunit CcmF. (355 aa)
	AKB85578.1	Putative cytochrome c biogenesis factor, archaeal. (144 aa)
	AKB85579.1	Putative cytochrome c biogenesis factor, archaeal. (177 aa)
	AKB85580.1	Rubrerythrin. (163 aa)
	AKB85828.1	Cytochrome c family protein, putative. (75 aa)

Your Current Organism:

Methanococcoides methylutens

NCBI taxonomy Id: 1434104
Other names: M. methylutens MM1, Methanococcoides methylutens MM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB84870.1	AKB84871.1	MCMEM_0817	MCMEM_0818	Hypothetical protein.	Phosphatidylethanolamine N-methyltransferase.	0.505
AKB84871.1	AKB84870.1	MCMEM_0818	MCMEM_0817	Phosphatidylethanolamine N-methyltransferase.	Hypothetical protein.	0.505
AKB84871.1	AKB84872.1	MCMEM_0818	MCMEM_0819	Phosphatidylethanolamine N-methyltransferase.	TMAO/DMSO reductase.	0.551
AKB84872.1	AKB84871.1	MCMEM_0819	MCMEM_0818	TMAO/DMSO reductase.	Phosphatidylethanolamine N-methyltransferase.	0.551
AKB84872.1	AKB85828.1	MCMEM_0819	MCMEM_1775	TMAO/DMSO reductase.	Cytochrome c family protein, putative.	0.823
AKB84873.1	AKB84874.1	MCMEM_0820	MCMEM_0821	Hypothetical protein.	Hypothetical protein.	0.437
AKB84874.1	AKB84873.1	MCMEM_0821	MCMEM_0820	Hypothetical protein.	Hypothetical protein.	0.437
AKB85529.1	AKB85530.1	MCMEM_1476	MCMEM_1477	Hypothetical protein.	Fibrillarin.	0.783
AKB85529.1	AKB85531.1	MCMEM_1476	MCMEM_1478	Hypothetical protein.	2,4-dienoyl-CoA reductase [NADPH].	0.583
AKB85529.1	AKB85532.1	MCMEM_1476	MCMEM_1479	Hypothetical protein.	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	0.401
AKB85530.1	AKB85529.1	MCMEM_1477	MCMEM_1476	Fibrillarin.	Hypothetical protein.	0.783
AKB85530.1	AKB85531.1	MCMEM_1477	MCMEM_1478	Fibrillarin.	2,4-dienoyl-CoA reductase [NADPH].	0.691
AKB85530.1	AKB85532.1	MCMEM_1477	MCMEM_1479	Fibrillarin.	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	0.460
AKB85531.1	AKB85529.1	MCMEM_1478	MCMEM_1476	2,4-dienoyl-CoA reductase [NADPH].	Hypothetical protein.	0.583
AKB85531.1	AKB85530.1	MCMEM_1478	MCMEM_1477	2,4-dienoyl-CoA reductase [NADPH].	Fibrillarin.	0.691
AKB85531.1	AKB85532.1	MCMEM_1478	MCMEM_1479	2,4-dienoyl-CoA reductase [NADPH].	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	0.568
AKB85531.1	AKB85534.1	MCMEM_1478	MCMEM_1481	2,4-dienoyl-CoA reductase [NADPH].	ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.	0.432
AKB85532.1	AKB85529.1	MCMEM_1479	MCMEM_1476	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	Hypothetical protein.	0.401
AKB85532.1	AKB85530.1	MCMEM_1479	MCMEM_1477	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	Fibrillarin.	0.460
AKB85532.1	AKB85531.1	MCMEM_1479	MCMEM_1478	Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.	2,4-dienoyl-CoA reductase [NADPH].	0.568