STRINGSTRING
AKB85696.1 AKB85696.1 rpl1 rpl1 rpl18e rpl18e rpl13 rpl13 rpl2 rpl2 rpl22 rpl22 rpl24 rpl24 rpl32e rpl32e rpl19e rpl19e rpl30 rpl30 rpl15 rpl15 rpl31e rpl31e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKB85696.1LSU ribosomal protein L30e. (95 aa)
rpl1LSU ribosomal protein L10Ae (L1p); Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa)
rpl18eLSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. (126 aa)
rpl13LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (139 aa)
rpl2LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (237 aa)
rpl22LSU ribosomal protein L17e (L22p); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (151 aa)
rpl24LSU ribosomal protein L26e (L24p); Located at the polypeptide exit tunnel on the outside of the subunit. (117 aa)
rpl32eLSU ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (148 aa)
rpl19eLSU ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (148 aa)
rpl30LSU ribosomal protein L7e (L30p). (153 aa)
rpl15LSU ribosomal protein L27Ae (L15p); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa)
rpl31eLSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (88 aa)
Your Current Organism:
Methanococcoides methylutens
NCBI taxonomy Id: 1434104
Other names: M. methylutens MM1, Methanococcoides methylutens MM1
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