STRINGSTRING
AKB53189.1 AKB53189.1 map map rpl13 rpl13 rps9 rps9 rpl30e rpl30e AKB53891.1 AKB53891.1 rps6e rps6e rpl24e rpl24e rpl37e rpl37e rpl21e rpl21e rpl37ae rpl37ae rpl15e rpl15e rps11 rps11 adk adk rpl15 rpl15 rpl30 rpl30 rps5 rps5 rpl18 rpl18 rpl19e rpl19e rpl32e rpl32e rpl6 rpl6 rps8 rps8 rps14 rps14 AKB55598.1 AKB55598.1 rps4e rps4e rpl14 rpl14 rpl29 rpl29 rpl22 rpl22 rps19p rps19p rpl2 rpl2 rpl23 rpl23 rpl4 rpl4 rps24e rps24e rpl44e rpl44e rpl39e rpl39e rpl31e rpl31e eif6 eif6 rpl18a rpl18a rpl12 rpl12 rpl10 rpl10 rpl1 rpl1 rpl11 rpl11 rpl40e rpl40e eif5a eif5a rps17e rps17e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKB53189.1LSU ribosomal protein L10e (L16p). (151 aa)
mapMethionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. (296 aa)
rpl13LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (140 aa)
rps9SSU ribosomal protein S16e (S9p); Belongs to the universal ribosomal protein uS9 family. (134 aa)
rpl30eLSU ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. (96 aa)
AKB53891.1Translation elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (684 aa)
rps6eSSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (139 aa)
rpl24eLSU ribosomal protein L24e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. (62 aa)
rpl37eLSU ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (56 aa)
rpl21eLSU ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
rpl37aeLSU ribosomal protein L37Ae; Binds to the 23S rRNA. (94 aa)
rpl15eLSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rps11SSU ribosomal protein S14e (S11p); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (126 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (215 aa)
rpl15LSU ribosomal protein L27Ae (L15p); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (140 aa)
rpl30LSU ribosomal protein L7e (L30p). (153 aa)
rps5SSU ribosomal protein S2e (S5p); With S4 and S12 plays an important role in translational accuracy. (208 aa)
rpl18LSU ribosomal protein L5e (L18p); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (140 aa)
rpl19eLSU ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa)
rpl32eLSU ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (146 aa)
rpl6LSU ribosomal protein L9e (L6p); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (176 aa)
rps8SSU ribosomal protein S15Ae (S8p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rps14SSU ribosomal protein S29e (S14p); Binds 16S rRNA, required for the assembly of 30S particles. (50 aa)
AKB55598.1LSU ribosomal protein L11e (L5p); Belongs to the universal ribosomal protein uL5 family. (153 aa)
rps4eSSU ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family. (235 aa)
rpl14LSU ribosomal protein L23e (L14p); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl29LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family. (67 aa)
rpl22LSU ribosomal protein L17e (L22p); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (151 aa)
rps19pSSU ribosomal protein S15e (S19p); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa)
rpl2LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa)
rpl23LSU ribosomal protein L23Ae (L23p); Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa)
rpl4LSU ribosomal protein L1e (L4p); Forms part of the polypeptide exit tunnel. (254 aa)
rps24eSSU ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (101 aa)
rpl44eLSU ribosomal protein L44e; Binds to the 23S rRNA. (92 aa)
rpl39eLSU ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family. (47 aa)
rpl31eLSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (89 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (219 aa)
rpl18aLSU ribosomal protein L18Ae. (58 aa)
rpl12LSU ribosomal protein L12a (P1/P2); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (106 aa)
rpl10LSU ribosomal protein P0 (L10p); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (348 aa)
rpl1LSU ribosomal protein L10Ae (L1p); Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa)
rpl11LSU ribosomal protein L12e (L11p); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
rpl40eLSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
eif5aEukaryotic translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (128 aa)
rps17eSSU ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
Your Current Organism:
Methanosarcina barkeri MS
NCBI taxonomy Id: 1434108
Other names: M. barkeri MS
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