STRINGSTRING
rps2 rps2 rps15 rps15 rps12 rps12 rps7 rps7 rps10 rps10 rps28e rps28e rps3ae rps3ae rps4 rps4 rps13 rps13 rps19e rps19e AKB56100.1 AKB56100.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps2SSU ribosomal protein SAe (S2p); Belongs to the universal ribosomal protein uS2 family. (247 aa)
rps15SSU ribosomal protein S13e (S15p). (152 aa)
rps12SSU ribosomal protein S23e (S12p); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rps7SSU ribosomal protein S5e (S7p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (185 aa)
rps10SSU ribosomal protein S20e (S10p); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rps28eSSU ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (73 aa)
rps3aeSSU ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. (207 aa)
rps4SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (216 aa)
rps13SSU ribosomal protein S18e (S13p); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (152 aa)
rps19eSSU ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa)
AKB56100.1Translation initiation factor SUI1-related protein; Belongs to the SUI1 family. (102 aa)
Your Current Organism:
Methanosarcina barkeri MS
NCBI taxonomy Id: 1434108
Other names: M. barkeri MS
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