5 items (Sulfolobus acidocaldarius SUSAZ) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHC52483.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (269 aa)
	AHC51743.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AHC52045.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	sal	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AHC52265.1	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)

Your Current Organism:

Sulfolobus acidocaldarius SUSAZ

NCBI taxonomy Id: 1435377
Other names: S. acidocaldarius SUSAZ

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHC51743.1	sal	SUSAZ_07180	SUSAZ_10170	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
AHC52045.1	sal	SUSAZ_09020	SUSAZ_10170	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AHC52483.1	sal	SUSAZ_04945	SUSAZ_10170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
sal	AHC51743.1	SUSAZ_10170	SUSAZ_07180	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
sal	AHC52045.1	SUSAZ_10170	SUSAZ_09020	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
sal	AHC52483.1	SUSAZ_10170	SUSAZ_04945	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.638