(7 nodes) Mixed, incl. Small ribosomal subunit, and Translation regulation network (Sulfolobus acidocaldarius SUSAZ)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps2	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (225 aa)
	rps5	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (214 aa)
	rps19p	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
	rps17e	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family. (82 aa)
	rps28e	30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family. (84 aa)
	AHC51211.1	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family. (99 aa)
	eif1a	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (108 aa)

Your Current Organism:

Sulfolobus acidocaldarius SUSAZ

NCBI taxonomy Id: 1435377
Other names: S. acidocaldarius SUSAZ

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHC51211.1	eif1a	SUSAZ_03935	SUSAZ_04430	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.999
AHC51211.1	rps17e	SUSAZ_03935	SUSAZ_03030	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
AHC51211.1	rps19p	SUSAZ_03935	SUSAZ_02685	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AHC51211.1	rps2	SUSAZ_03935	SUSAZ_00420	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
AHC51211.1	rps28e	SUSAZ_03935	SUSAZ_03135	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999
AHC51211.1	rps5	SUSAZ_03935	SUSAZ_02605	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
eif1a	AHC51211.1	SUSAZ_04430	SUSAZ_03935	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	0.999
eif1a	rps17e	SUSAZ_04430	SUSAZ_03030	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
eif1a	rps19p	SUSAZ_04430	SUSAZ_02685	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
eif1a	rps2	SUSAZ_04430	SUSAZ_00420	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
eif1a	rps28e	SUSAZ_04430	SUSAZ_03135	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999
eif1a	rps5	SUSAZ_04430	SUSAZ_02605	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
rps17e	AHC51211.1	SUSAZ_03030	SUSAZ_03935	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	0.999
rps17e	eif1a	SUSAZ_03030	SUSAZ_04430	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.999
rps17e	rps19p	SUSAZ_03030	SUSAZ_02685	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rps17e	rps2	SUSAZ_03030	SUSAZ_00420	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
rps17e	rps28e	SUSAZ_03030	SUSAZ_03135	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999
rps17e	rps5	SUSAZ_03030	SUSAZ_02605	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
rps19p	AHC51211.1	SUSAZ_02685	SUSAZ_03935	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	0.999
rps19p	eif1a	SUSAZ_02685	SUSAZ_04430	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.999