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| | rpl5 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (178 aa) |
| | AHC50547.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa) |
| | AHC50549.1 | DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa) |
| | AHC50561.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa) |
| | nep1 | 16S rRNA methyltransferase; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. (219 aa) |
| | mre11 | Metallophosphoesterase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. (382 aa) |
| | AHC50588.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa) |
| | AHC52385.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (111 aa) |
| | lysS | lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. (492 aa) |
| | AHC50596.1 | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (412 aa) |
| | rps13 | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (170 aa) |
| | rps4 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (176 aa) |
| | rps11 | 30S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rpoD | DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (264 aa) |
| | rpoN | DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. (66 aa) |
| | AHC50621.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa) |
| | AHC50632.1 | DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa) |
| | tmcA | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). (738 aa) |
| | AHC50656.1 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa) |
| | AHC50676.1 | Iron dependent repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | AHC50681.1 | DNA-directed RNA polymerase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa) |
| | rpoL | DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family. (90 aa) |
| | csl4 | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. (188 aa) |
| | AHC50687.1 | Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa) |
| | AHC50702.1 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa) |
| | nucS | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (250 aa) |
| | AHC50752.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa) |
| | hel308 | DEAD/DEAH box helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (705 aa) |
| | AHC50766.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa) |
| | AHC50771.1 | Transposase IS605; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa) |
| | AHC50783.1 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa) |
| | AHC52414.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (38 aa) |
| | AHC50853.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa) |
| | AHC50860.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa) |
| | AHC52417.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (44 aa) |
| | sfsA | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SfsA family. (225 aa) |
| | tmcA-2 | ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). (772 aa) |
| | AHC50925.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa) |
| | AHC50939.1 | alanyl-tRNA editing protein AlaX; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa) |
| | AHC50942.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | AHC50953.1 | Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa) |
| | dbh | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. (354 aa) |
| | rpl15 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa) |
| | rps5 | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (214 aa) |
| | rpl18 | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (197 aa) |
| | rpl19e | 50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa) |
| | rpl6 | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (186 aa) |
| | AHC50988.1 | 30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS8 family. (133 aa) |
| | rps14P | 30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the archaeal forms appear to contain the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology. (54 aa) |
| | rps4e | 30S ribosomal protein S4; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa) |
| | rpl24 | 50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (134 aa) |
| | rpl14 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (138 aa) |
| | rps17 | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (114 aa) |
| | rnp1 | Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. (79 aa) |
| | rps3 | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (231 aa) |
| | rpl22 | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (156 aa) |
| | rps19p | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa) |
| | rpl2p | 50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa) |
| | rpl23 | 50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (81 aa) |
| | rpl4lp | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (266 aa) |
| | rpl3 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (342 aa) |
| | ileS | isoleucyl-tRNA synthase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1050 aa) |
| | fusA | Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (737 aa) |
| | AHC51010.1 | Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa) |
| | AHC51013.1 | Brix domain-containing protein; Probably involved in the biogenesis of the ribosome. (182 aa) |
| | rpl37ae | 50S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. Putative zinc-binding subfamily. (70 aa) |
| | rrp4 | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. (249 aa) |
| | AHC51022.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa) |
| | AHC51027.1 | RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa) |
| | AHC51028.1 | Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa) |
| | AHC51029.1 | 16S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (222 aa) |
| | AHC52434.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa) |
| | AHC51033.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa) |
| | rpl37e | 50S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (61 aa) |
| | AHC51039.1 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | tfe | Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...] (179 aa) |
| | AHC51044.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa) |
| | AHC51046.1 | PUA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa) |
| | AHC51049.1 | Sm ribonucleo; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa) |
| | AHC51053.1 | tRNA-splicing endonuclease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa) |
| | rps10p | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | tuf | Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (435 aa) |
| | rps7 | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (195 aa) |
| | rps12 | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (147 aa) |
| | nusA | Transcription elongation factor NusA; Participates in transcription termination. Belongs to the NusA family. (143 aa) |
| | rpl30e | 50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family. (104 aa) |
| | rpoA2 | DNA-directed RNA polymerase subunit A'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (393 aa) |
| | AHC51070.1 | DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (880 aa) |
| | AHC51071.1 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1126 aa) |
| | rpoH | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. (84 aa) |
| | infB | Translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. (602 aa) |
| | rpl24e | 50S ribosomal protein L24; Binds to the 23S rRNA. (62 aa) |
| | AHC51079.1 | Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa) |
| | AHC51087.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa) |
| | radA | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. (321 aa) |
| | AHC51092.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa) |
| | AHC51093.1 | RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa) |
| | AHC51112.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa) |
| | AHC51119.1 | Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa) |
| | AHC51124.1 | Transcription elongation factor NusA; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa) |
| | aspC | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn). (429 aa) |
| | AHC51126.1 | tRNA pseudouridine synthase D; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa) |
| | ef1b | Elongation factor 1-beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (91 aa) |
| | AHC51130.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa) |
| | fen | Endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as [...] (302 aa) |
| | lig | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (598 aa) |
| | AHC51147.1 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa) |
| | AHC51151.1 | Sm ribonucleo; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa) |
| | AHC51161.1 | Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa) |
| | AHC51162.1 | tRNA pseudouridine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa) |
| | rpl14e | 50S ribosomal protein L14; Binds 50S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL14 family. (96 aa) |
| | AHC51164.1 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (911 aa) |
| | AHC51166.1 | RNA polymerase Rpo13 subunit HTH domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa) |
| | pcn | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. (250 aa) |
| | pcn-2 | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. (247 aa) |
| | AHC51181.1 | Translation initiation factor IF-2 subunit gamma; eIF-2G; forms a ternary complex with GTP and initiator tRNA in the early steps of protein synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa) |
| | AHC51183.1 | DNA-directed RNA polymerase subunit E; Participates in both the initiation and recycling phases of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa) |
| | rgy | Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family. (1248 aa) |
| | AHC51190.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa) |
| | AHC51191.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (50 aa) |
| | endA | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. (181 aa) |
| | rpoP | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. (48 aa) |
| | AHC51211.1 | Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family. (99 aa) |
| | AHC51218.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa) |
| | AHC51225.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa) |
| | AHC51230.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa) |
| | AHC51237.1 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa) |
| | AHC51241.1 | Minichromosome maintenance protein MCM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MCM family. (688 aa) |
| | AHC51243.1 | RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa) |
| | rfc | ATPase AAA; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (325 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (211 aa) |
| | eif2b | Translation initiation factor IF-2 subunit beta; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-beta/eIF-5 family. (141 aa) |
| | eif1a | Translation initiation factor IF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (108 aa) |
| | AHC51302.1 | RNA-processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa) |
| | AHC51311.1 | Single-stranded DNA-binding protein; In Sulfolobus solfataricus this protein plays a role in promoter opening and RNA polymerase recruitment under specific conditions; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa) |
| | AHC51325.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa) |
| | prf1 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (336 aa) |
| | AHC51331.1 | PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa) |
| | AHC51335.1 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa) |
| | AHC51337.1 | Regulatory protein DeoR; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa) |
| | AHC51362.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa) |
| | AHC51375.1 | MaoC family dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa) |
| | AHC51389.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) |
| | AHC51393.1 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (348 aa) |
| | AHC51408.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | AHC51447.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa) |
| | AHC52507.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (349 aa) |
| | AHC51470.1 | MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa) |
| | AHC51501.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa) |
| | fau-1 | RNA-binding protein; Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences. (418 aa) |
| | AHC51512.1 | snRNP Sm; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa) |
| | thrS | threonyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); in archaea some ThrRS as split into two proteins,ThrRS-cat for aminoacylation and ThrRS-ed for editing misacylation events; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. (549 aa) |
| | AHC51552.1 | Ribosome biogenesis protein Nop10; Derived by automated computational analysis using gene prediction method: Protein Homology. (56 aa) |
| | AHC51553.1 | Translation initiation factor IF-2 subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa) |
| | rpl44e | 50S ribosomal protein L44; Binds to the 23S rRNA. (95 aa) |
| | pcn-3 | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. (245 aa) |
| | AHC51561.1 | RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa) |
| | cca | tRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (416 aa) |
| | creN7 | Chorismate-binding protein; A probable chromatin protein, binds double-strand DNA without sequence specificity. Constrains negative DNA supercoils. Belongs to the Cren7 family. (59 aa) |
| | AHC51579.1 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa) |
| | srp54 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (444 aa) |
| | eif5a | Translation initiation factor IF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (131 aa) |
| | top6A | DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (386 aa) |
| | top6B | DNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (532 aa) |
| | AHC51587.1 | ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa) |
| | AHC51588.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa) |
| | AHC51589.1 | Topoisomerase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication. (1153 aa) |
| | albA | DNA-binding protein; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (97 aa) |
| | AHC51594.1 | DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa) |
| | tbp | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (166 aa) |
| | AHC51608.1 | Transcription initiation factor IIB 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa) |
| | trm1 | N2,N2-dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (382 aa) |
| | AHC51611.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa) |
| | flpA | SAM-dependent methyltransferase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (231 aa) |
| | AHC51614.1 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa) |
| | AHC51618.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | AHC51622.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa) |
| | rpoK | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. (89 aa) |
| | AHC51633.1 | DNA topoisomerase I; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa) |
| | AHC51648.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (907 aa) |
| | rpl10 | Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (335 aa) |
| | rpl1 | 50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (221 aa) |
| | rpl11 | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (170 aa) |
| | spt5 | Transcription antitermination protein NusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (152 aa) |
| | rplX | 50S ribosomal protein LX; This protein is unique to archaeal ribosomes; function unknown; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa) |
| | eif6 | Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (223 aa) |
| | AHC51706.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PDCD5 family. (115 aa) |
| | AHC51709.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa) |
| | AHC51725.1 | SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa) |
| | xerA | Recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerA subfamily. (287 aa) |
| | AHC51735.1 | Helicase; Hel112; monomeric form of the enzyme from Sulfolobus shows 3'-5' ATP-dependent helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (876 aa) |
| | AHC51736.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa) |
| | AHC51739.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa) |
| | pheT | phenylalanyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa) |
| | pheS | phenylalanyl-tRNA synthetase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily. (465 aa) |
| | rpl7ae | 50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (126 aa) |
| | AHC51755.1 | Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein has been shown to be aphidicolin resistant and stable up to 80#C; Derived by automated computational analysis using gene prediction method: Protein Homology. (876 aa) |
| | AHC51774.1 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa) |
| | hjc | Endonuclease; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. (143 aa) |
| | AHC51787.1 | Potassium-transporting ATPase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa) |
| | AHC51803.1 | DNA-directed RNA polymerase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa) |
| | lrp | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa) |
| | AHC51816.1 | Phosphate uptake regulator PhoU; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa) |
| | AHC51821.1 | methionyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa) |
| | AHC51831.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa) |
| | AHC51837.1 | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | AHC51848.1 | tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa) |
| | AHC51851.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa) |
| | AHC51853.1 | Translation factor Sua5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (352 aa) |
| | AHC51865.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa) |
| | AHC51866.1 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa) |
| | AHC51867.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa) |
| | AHC51916.1 | Ribonuclease H; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa) |
| | AHC51934.1 | Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa) |
| | AHC51951.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa) |
| | AHC51961.1 | Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | AHC52567.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (82 aa) |
| | AHC51977.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa) |
| | AHC52573.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (64 aa) |
| | AHC52577.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa) |
| | AHC52581.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (49 aa) |
| | AHC52592.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa) |
| | AHC52051.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa) |
| | AHC52061.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa) |
| | AHC52088.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa) |
| | AHC52622.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (97 aa) |
| | AHC52133.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | AHC52629.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (44 aa) |
| | AHC52153.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | AHC52175.1 | DNA polymerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa) |
| | AHC52178.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa) |
| | AHC52182.1 | RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa) |
| | AHC52193.1 | RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa) |
| | AHC52639.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (52 aa) |
| | AHC52203.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa) |
| | AHC52644.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (122 aa) |
| | AHC52229.1 | CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa) |
| | AHC52232.1 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa) |
| | AHC52233.1 | CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa) |
| | AHC52234.1 | CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa) |
| | AHC52651.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (133 aa) |
| | AHC52262.1 | Transcriptional regulator TrmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa) |
| | AHC52318.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | AHC52669.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (118 aa) |
| | thiI | tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (369 aa) |
| | AHC52364.1 | ParR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa) |
| | AHC52367.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa) |
| | nac | NagC family transcriptional regulator; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (116 aa) |
