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| | fen | Endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as [...] (302 aa) |
| | lig | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (598 aa) |
| | AHC51166.1 | RNA polymerase Rpo13 subunit HTH domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa) |
| | pcn | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. (250 aa) |
| | pcn-2 | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. (247 aa) |
| | AHC51183.1 | DNA-directed RNA polymerase subunit E; Participates in both the initiation and recycling phases of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa) |
| | rgy | Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family. (1248 aa) |
| | AHC51190.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa) |
| | AHC51191.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (50 aa) |
| | rpoP | DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. (48 aa) |
| | AHC51218.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa) |
| | AHC51225.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa) |
| | AHC51230.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa) |
| | AHC51237.1 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa) |
| | AHC51241.1 | Minichromosome maintenance protein MCM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MCM family. (688 aa) |
| | rfc | ATPase AAA; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (325 aa) |
| | AHC51325.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa) |
| | AHC51331.1 | PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa) |
| | AHC51337.1 | Regulatory protein DeoR; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa) |
| | AHC51389.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) |
| | AHC51408.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | AHC51447.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa) |
| | AHC52507.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (349 aa) |
| | AHC51470.1 | MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa) |
| | AHC51501.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa) |
| | pcn-3 | DNA polymerase; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. (245 aa) |
| | creN7 | Chorismate-binding protein; A probable chromatin protein, binds double-strand DNA without sequence specificity. Constrains negative DNA supercoils. Belongs to the Cren7 family. (59 aa) |
| | top6A | DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (386 aa) |
| | top6B | DNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (532 aa) |
| | AHC51588.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa) |
| | AHC51589.1 | Topoisomerase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication. (1153 aa) |
| | albA | DNA-binding protein; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (97 aa) |
| | AHC51594.1 | DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa) |
| | tbp | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (166 aa) |
| | AHC51611.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa) |
| | AHC51618.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | AHC51622.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa) |
| | rpoK | DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. (89 aa) |
| | AHC51633.1 | DNA topoisomerase I; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa) |
| | AHC51648.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa) |
| | AHC51706.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PDCD5 family. (115 aa) |
| | AHC51709.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa) |
| | xerA | Recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerA subfamily. (287 aa) |
| | AHC51736.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa) |
| | AHC51739.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa) |
| | AHC51755.1 | Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein has been shown to be aphidicolin resistant and stable up to 80#C; Derived by automated computational analysis using gene prediction method: Protein Homology. (876 aa) |
| | hjc | Endonuclease; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. (143 aa) |
| | lrp | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa) |
| | AHC51816.1 | Phosphate uptake regulator PhoU; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa) |
| | AHC51831.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa) |
| | AHC51837.1 | Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | AHC51851.1 | Universal stress protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa) |
| | AHC51866.1 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa) |
| | AHC51867.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa) |
| | AHC51934.1 | Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa) |
| | AHC51951.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa) |
| | AHC51961.1 | Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | AHC52567.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (82 aa) |
| | AHC51977.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa) |
| | AHC52573.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (64 aa) |
| | AHC52577.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa) |
| | AHC52581.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (49 aa) |
| | AHC52592.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa) |
| | AHC52051.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa) |
| | AHC52061.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa) |
| | AHC52088.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa) |
| | AHC52622.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (97 aa) |
| | AHC52133.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | AHC52629.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (44 aa) |
| | AHC52153.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | AHC52175.1 | DNA polymerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa) |
| | AHC52178.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa) |
| | AHC52182.1 | RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa) |
| | AHC52193.1 | RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa) |
| | AHC52639.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (52 aa) |
| | AHC52203.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa) |
| | AHC52644.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (122 aa) |
| | AHC52229.1 | CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa) |
| | AHC52262.1 | Transcriptional regulator TrmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa) |
| | AHC52318.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | AHC52669.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (118 aa) |
| | AHC52364.1 | ParR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa) |
| | AHC52367.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa) |
| | AHC50547.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa) |
| | mre11 | Metallophosphoesterase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. (382 aa) |
| | AHC50588.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa) |
| | AHC52385.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (111 aa) |
| | AHC50596.1 | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa) |
| | rpoD | DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (264 aa) |
| | rpoN | DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. (66 aa) |
| | AHC50621.1 | AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (52 aa) |
| | AHC50632.1 | DtxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa) |
| | AHC50676.1 | Iron dependent repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | AHC50681.1 | DNA-directed RNA polymerase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa) |
| | rpoL | DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family. (90 aa) |
| | AHC50702.1 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa) |
| | nucS | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (250 aa) |
| | AHC50752.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa) |
| | hel308 | DEAD/DEAH box helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (705 aa) |
| | AHC50766.1 | CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa) |
| | AHC50771.1 | Transposase IS605; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa) |
| | AHC52414.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (38 aa) |
| | AHC50853.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa) |
| | AHC50860.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa) |
| | AHC52417.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (44 aa) |
| | sfsA | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SfsA family. (225 aa) |
| | AHC50925.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa) |
| | AHC50942.1 | Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | dbh | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. (354 aa) |
| | AHC51010.1 | Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa) |
| | AHC52434.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa) |
| | AHC51039.1 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | tfe | Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...] (179 aa) |
| | AHC51044.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa) |
| | rpoA2 | DNA-directed RNA polymerase subunit A'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (393 aa) |
| | AHC51070.1 | DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (880 aa) |
| | AHC51071.1 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1126 aa) |
| | rpoH | DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. (84 aa) |
| | AHC51079.1 | Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa) |
| | AHC51087.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa) |
| | radA | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. (321 aa) |
| | AHC51112.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa) |
| | AHC51130.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa) |
