(15 nodes) Cytosolic ribosome network (Sulfolobus acidocaldarius SUSAZ)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps24e	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family. (118 aa)
	AHC51704.1	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AHC51771.1	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	rps19e	30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (154 aa)
	rpl34e	50S ribosomal protein L34; The function of this protein in the ribosome is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family. (87 aa)
	rpl19e	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa)
	rpl32e	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL32 family. (131 aa)
	rps19p	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
	rpl37ae	50S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. Putative zinc-binding subfamily. (70 aa)
	rpl15e	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL15 family. (217 aa)
	rps3ae	30S ribosomal protein S3; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (197 aa)
	rpl21e	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL21 family. (103 aa)
	rps17e	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family. (82 aa)
	rpl30e	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family. (104 aa)
	rpl24e	50S ribosomal protein L24; Binds to the 23S rRNA. (62 aa)

Your Current Organism:

Sulfolobus acidocaldarius SUSAZ

NCBI taxonomy Id: 1435377
Other names: S. acidocaldarius SUSAZ

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHC51704.1	AHC51771.1	SUSAZ_06960	SUSAZ_07340	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHC51704.1	rpl15e	SUSAZ_06960	SUSAZ_02805	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
AHC51704.1	rpl19e	SUSAZ_06960	SUSAZ_02615	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AHC51704.1	rpl21e	SUSAZ_06960	SUSAZ_02850	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
AHC51704.1	rpl24e	SUSAZ_06960	SUSAZ_03130	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Binds to the 23S rRNA.	0.999
AHC51704.1	rpl30e	SUSAZ_06960	SUSAZ_03095	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
AHC51704.1	rpl32e	SUSAZ_06960	SUSAZ_02620	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL32 family.	0.999
AHC51704.1	rpl34e	SUSAZ_06960	SUSAZ_02575	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L34; The function of this protein in the ribosome is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family.	0.999
AHC51704.1	rpl37ae	SUSAZ_06960	SUSAZ_02760	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. Putative zinc-binding subfamily.	0.999
AHC51704.1	rps17e	SUSAZ_06960	SUSAZ_03030	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
AHC51704.1	rps19e	SUSAZ_06960	SUSAZ_06975	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
AHC51704.1	rps19p	SUSAZ_06960	SUSAZ_02685	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AHC51704.1	rps24e	SUSAZ_06960	SUSAZ_03880	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
AHC51704.1	rps3ae	SUSAZ_06960	SUSAZ_02820	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
AHC51771.1	AHC51704.1	SUSAZ_07340	SUSAZ_06960	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHC51771.1	rpl15e	SUSAZ_07340	SUSAZ_02805	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
AHC51771.1	rpl19e	SUSAZ_07340	SUSAZ_02615	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AHC51771.1	rpl21e	SUSAZ_07340	SUSAZ_02850	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
AHC51771.1	rpl24e	SUSAZ_07340	SUSAZ_03130	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Binds to the 23S rRNA.	0.999
AHC51771.1	rpl30e	SUSAZ_07340	SUSAZ_03095	30S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999