(24 nodes) Mixed, incl. Cation transmembrane transport, and Cupredoxin network (Corynebacterium frankenforstense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APT88041.1	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	APT88042.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	APT88043.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	APT88186.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (888 aa)
	APT88276.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (214 aa)
	APT88559.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	APT88560.1	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	APT88561.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (62 aa)
	APT88600.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	APT88601.1	Macro domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	APT88602.1	GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	kup	Hypothetical protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. (678 aa)
	APT88737.1	5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APT88977.1	Cobalt-zinc-cadmium resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	APT88999.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	APT89000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	APT89001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (82 aa)
	APT89002.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (480 aa)
	APT89173.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	APT89611.1	Sodium:glutamate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	APT89612.1	Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	APT89613.1	Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	APT89691.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
	APT89708.1	Cation-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)

Your Current Organism:

Corynebacterium frankenforstense

NCBI taxonomy Id: 1437875
Other names: C. frankenforstense DSM 45800, Corynebacterium frankenforstense DSM 45800, Corynebacterium sp. ST18

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT88041.1	APT88042.1	CFRA_00615	CFRA_00620	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
APT88041.1	APT88043.1	CFRA_00615	CFRA_00625	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
APT88041.1	APT88276.1	CFRA_00615	CFRA_02175	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	0.695
APT88042.1	APT88041.1	CFRA_00620	CFRA_00615	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
APT88042.1	APT88043.1	CFRA_00620	CFRA_00625	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
APT88042.1	APT88276.1	CFRA_00620	CFRA_02175	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	0.655
APT88043.1	APT88041.1	CFRA_00625	CFRA_00615	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
APT88043.1	APT88042.1	CFRA_00625	CFRA_00620	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
APT88186.1	APT88560.1	CFRA_01595	CFRA_03885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
APT88186.1	APT88999.1	CFRA_01595	CFRA_06785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
APT88276.1	APT88041.1	CFRA_02175	CFRA_00615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	Arsenite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
APT88276.1	APT88042.1	CFRA_02175	CFRA_00620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APT88559.1	APT88560.1	CFRA_03880	CFRA_03885	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
APT88560.1	APT88186.1	CFRA_03885	CFRA_01595	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
APT88560.1	APT88559.1	CFRA_03885	CFRA_03880	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
APT88560.1	APT88561.1	CFRA_03885	CFRA_03890	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.507
APT88560.1	APT89691.1	CFRA_03885	CFRA_11160	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
APT88561.1	APT88560.1	CFRA_03890	CFRA_03885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
APT88600.1	APT88601.1	CFRA_04205	CFRA_04210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macro domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APT88600.1	APT88602.1	CFRA_04205	CFRA_04215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679