STRINGSTRING
IM53_005005 IM53_005005 dnaA dnaA recF recF IM53_012130 IM53_012130 IM53_012005 IM53_012005 IM53_011860 IM53_011860 IM53_010760 IM53_010760 dtd dtd IM53_011070 IM53_011070 IM53_011085 IM53_011085 IM53_011095 IM53_011095 rpsU rpsU dnaG dnaG IM53_007175 IM53_007175 IM53_007165 IM53_007165 IM53_007115 IM53_007115 IM53_007055 IM53_007055 IM53_006935 IM53_006935 IM53_006905 IM53_006905 IM53_006655 IM53_006655 IM53_009565 IM53_009565 IM53_000070 IM53_000070 rpmG rpmG rpmB rpmB IM53_009995 IM53_009995 GCA_001564415_00746 GCA_001564415_00746 IM53_021370 IM53_021370 IM53_012295 IM53_012295 IM53_012350 IM53_012350 IM53_012395 IM53_012395 IM53_012640 IM53_012640 IM53_012725 IM53_012725 cobB cobB IM53_008970 IM53_008970 IM53_016340 IM53_016340 IM53_016395 IM53_016395 IM53_016520 IM53_016520 rplM rplM rpsI rpsI IM53_015040 IM53_015040 IM53_014930 IM53_014930 GCA_001564415_01433 GCA_001564415_01433 IM53_004900 IM53_004900 IM53_004855 IM53_004855 gfa gfa IM53_004140 IM53_004140 IM53_004075 IM53_004075 IM53_003860 IM53_003860 IM53_003835 IM53_003835 IM53_003720 IM53_003720 rplY rplY rplK rplK rplA rplA rplJ rplJ rplL rplL rpsG rpsG rpsJ rpsJ rplC rplC rplD rplD rplW rplW rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP rpmC rpmC rpsQ rpsQ rplN rplN rplX rplX rplE rplE rpsN rpsN rpsH rpsH rplF rplF rplR rplR rpsE rpsE rpmD rpmD rplO rplO rpsK rpsK rpsD rpsD rplQ rplQ IM53_001580 IM53_001580 kdkA kdkA IM53_020880 IM53_020880 IM53_020785 IM53_020785 cutC cutC IM53_020120 IM53_020120 IM53_020110 IM53_020110 IM53_019980 IM53_019980 IM53_019805 IM53_019805 IM53_019085 IM53_019085 infB infB rpsO rpsO rpmI rpmI rplT rplT ihfA ihfA IM53_007760 IM53_007760 IM53_009835 IM53_009835 IM53_008180 IM53_008180 IM53_008215 IM53_008215 IM53_008260 IM53_008260 edd edd guaB guaB ihfB ihfB IM53_017580 IM53_017580 rpmJ rpmJ eutC eutC IM53_017070 IM53_017070 IM53_017275 IM53_017275 IM53_017280 IM53_017280 GCA_001564415_03334 GCA_001564415_03334 IM53_017395 IM53_017395 smc smc rplI rplI rpsR rpsR rpsF rpsF IM53_013020 IM53_013020 kynU kynU IM53_013215 IM53_013215 IM53_013300 IM53_013300 IM53_013540 IM53_013540 IM53_013705 IM53_013705 rpsB rpsB IM53_014090 IM53_014090 IM53_014105 IM53_014105 IM53_014360 IM53_014360 recO recO IM53_014565 IM53_014565 IM53_014575 IM53_014575 IM53_014580 IM53_014580 rpsP rpsP IM53_002975 IM53_002975 IM53_003020 IM53_003020 rpsT rpsT rpmA rpmA rplU rplU IM53_000860 IM53_000860 rpmF rpmF recR recR IM53_001060 IM53_001060 IM53_007450 IM53_007450 IM53_015600 IM53_015600 IM53_015520 IM53_015520 rpmE2 rpmE2 IM53_015390 IM53_015390 IM53_015225 IM53_015225 IM53_009280 IM53_009280 IM53_001870 IM53_001870
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
IM53_005005Unannotated protein. (348 aa)
dnaAUnannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (442 aa)
recFUnannotated protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (368 aa)
IM53_012130Unannotated protein. (133 aa)
IM53_012005Unannotated protein. (242 aa)
IM53_011860Unannotated protein. (127 aa)
IM53_010760Unannotated protein. (204 aa)
dtdUnannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (146 aa)
IM53_011070Unannotated protein. (200 aa)
IM53_011085Unannotated protein. (740 aa)
IM53_011095Unannotated protein. (266 aa)
rpsUUnannotated protein; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (582 aa)
IM53_007175Unannotated protein. (203 aa)
IM53_007165Unannotated protein; Belongs to the ParB family. (309 aa)
IM53_007115Unannotated protein; Belongs to the UPF0758 family. (243 aa)
IM53_007055Unannotated protein. (203 aa)
IM53_006935Unannotated protein. (197 aa)
IM53_006905Unannotated protein. (283 aa)
IM53_006655Unannotated protein. (193 aa)
IM53_009565Unannotated protein. (1106 aa)
IM53_000070Unannotated protein. (443 aa)
rpmGUnannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (55 aa)
rpmBUnannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
IM53_009995Unannotated protein. (145 aa)
GCA_001564415_00746Unannotated protein. (72 aa)
IM53_021370Unannotated protein. (425 aa)
IM53_012295Unannotated protein. (335 aa)
IM53_012350Unannotated protein. (223 aa)
IM53_012395Unannotated protein. (690 aa)
IM53_012640Unannotated protein. (180 aa)
IM53_012725Unannotated protein. (837 aa)
cobBUnannotated protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. (293 aa)
IM53_008970Unannotated protein. (322 aa)
IM53_016340Unannotated protein. (113 aa)
IM53_016395Unannotated protein. (61 aa)
IM53_016520Unannotated protein. (130 aa)
rplMUnannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
rpsIUnannotated protein; Belongs to the universal ribosomal protein uS9 family. (130 aa)
IM53_015040Unannotated protein. (245 aa)
IM53_014930Unannotated protein; Belongs to the transcriptional regulatory Fis family. (90 aa)
GCA_001564415_01433Unannotated protein. (226 aa)
IM53_004900Unannotated protein; Belongs to the N(4)/N(6)-methyltransferase family. (354 aa)
IM53_004855Unannotated protein. (500 aa)
gfaUnannotated protein; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (191 aa)
IM53_004140Unannotated protein. (297 aa)
IM53_004075Unannotated protein; Belongs to the Cob(I)alamin adenosyltransferase family. (185 aa)
IM53_003860Unannotated protein. (261 aa)
IM53_003835Unannotated protein. (785 aa)
IM53_003720Unannotated protein. (568 aa)
rplYUnannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (211 aa)
rplKUnannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa)
rplAUnannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa)
rplJUnannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (177 aa)
rplLUnannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa)
rpsGUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (155 aa)
rpsJUnannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rplCUnannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (216 aa)
rplDUnannotated protein; Forms part of the polypeptide exit tunnel. (201 aa)
rplWUnannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (104 aa)
rplBUnannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa)
rpsSUnannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (89 aa)
rplVUnannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (111 aa)
rpsCUnannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (244 aa)
rplPUnannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
rpmCUnannotated protein; Belongs to the universal ribosomal protein uL29 family. (61 aa)
rpsQUnannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (89 aa)
rplNUnannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplXUnannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa)
rplEUnannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa)
rpsNUnannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rpsHUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rplFUnannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (175 aa)
rplRUnannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa)
rpsEUnannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (180 aa)
rpmDUnannotated protein. (63 aa)
rplOUnannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa)
rpsKUnannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (130 aa)
rpsDUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa)
rplQUnannotated protein. (127 aa)
IM53_001580Unannotated protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa)
kdkAUnannotated protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (249 aa)
IM53_020880Unannotated protein. (598 aa)
IM53_020785Unannotated protein. (305 aa)
cutCUnannotated protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (243 aa)
IM53_020120Unannotated protein; Belongs to the DnaA family. HdA subfamily. (233 aa)
IM53_020110Unannotated protein. (339 aa)
IM53_019980Unannotated protein; Belongs to the bacterial histone-like protein family. (141 aa)
IM53_019805Unannotated protein. (254 aa)
IM53_019085Unannotated protein. (531 aa)
infBUnannotated protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (903 aa)
rpsOUnannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (86 aa)
rpmIUnannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rplTUnannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
ihfAUnannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (99 aa)
IM53_007760Unannotated protein. (540 aa)
IM53_009835Unannotated protein. (146 aa)
IM53_008180Unannotated protein. (436 aa)
IM53_008215Unannotated protein. (270 aa)
IM53_008260Unannotated protein. (192 aa)
eddUnannotated protein; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (638 aa)
guaBUnannotated protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (559 aa)
ihfBUnannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (103 aa)
IM53_017580Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (561 aa)
rpmJUnannotated protein; Belongs to the bacterial ribosomal protein bL36 family. (41 aa)
eutCUnannotated protein; Belongs to the EutC family. (271 aa)
IM53_017070Unannotated protein. (499 aa)
IM53_017275Unannotated protein. (690 aa)
IM53_017280Unannotated protein. (532 aa)
GCA_001564415_03334Unannotated protein. (248 aa)
IM53_017395Unannotated protein. (334 aa)
smcUnannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1167 aa)
rplIUnannotated protein; Binds to the 23S rRNA. (149 aa)
rpsRUnannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa)
rpsFUnannotated protein; Binds together with S18 to 16S ribosomal RNA. (143 aa)
IM53_013020Unannotated protein. (125 aa)
kynUUnannotated protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (423 aa)
IM53_013215Unannotated protein. (126 aa)
IM53_013300Unannotated protein. (157 aa)
IM53_013540Unannotated protein; May be involved in recombinational repair of damaged DNA. (554 aa)
IM53_013705Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (476 aa)
rpsBUnannotated protein; Belongs to the universal ribosomal protein uS2 family. (265 aa)
IM53_014090Unannotated protein. (251 aa)
IM53_014105Unannotated protein. (200 aa)
IM53_014360Unannotated protein. (88 aa)
recOUnannotated protein; Involved in DNA repair and RecF pathway recombination. (240 aa)
IM53_014565Unannotated protein. (542 aa)
IM53_014575Unannotated protein. (500 aa)
IM53_014580Unannotated protein. (427 aa)
rpsPUnannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (85 aa)
IM53_002975Unannotated protein. (387 aa)
IM53_003020Unannotated protein. (651 aa)
rpsTUnannotated protein; Binds directly to 16S ribosomal RNA. (89 aa)
rpmAUnannotated protein; Belongs to the bacterial ribosomal protein bL27 family. (86 aa)
rplUUnannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (106 aa)
IM53_000860Unannotated protein; Belongs to the small heat shock protein (HSP20) family. (158 aa)
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (64 aa)
recRUnannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa)
IM53_001060Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (106 aa)
IM53_007450Unannotated protein; Belongs to the UPF0758 family. (159 aa)
IM53_015600Unannotated protein. (220 aa)
IM53_015520Unannotated protein. (582 aa)
rpmE2Unannotated protein. (92 aa)
IM53_015390Unannotated protein. (807 aa)
IM53_015225Unannotated protein. (198 aa)
IM53_009280Unannotated protein. (1343 aa)
IM53_001870Unannotated protein. (297 aa)
Your Current Organism:
Xanthomonas phaseoli
NCBI taxonomy Id: 1437877
Other names: X. phaseoli pv. dieffenbachiae LMG 695, Xanthomonas axonopodis pv. dieffenbachiae LMG 695, Xanthomonas phaseoli pv. dieffenbachiae LMG 695
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