STRINGSTRING
IM53_012535 IM53_012535 ntrC ntrC IM53_012315 IM53_012315 IM53_012300 IM53_012300 IM53_005025 IM53_005025 IM53_010220 IM53_010220 IM53_009475 IM53_009475 IM53_009435 IM53_009435 IM53_006630 IM53_006630 IM53_006830 IM53_006830 IM53_007020 IM53_007020 rho rho ftsE ftsE IM53_010830 IM53_010830 IM53_010750 IM53_010750 IM53_010695 IM53_010695 metN metN atpD atpD IM53_011745 IM53_011745 IM53_011765 IM53_011765 IM53_011940 IM53_011940 IM53_012105 IM53_012105 IM53_009620 IM53_009620 dnaA dnaA IM53_004800 IM53_004800 IM53_000480 IM53_000480 IM53_005870 IM53_005870 IM53_009335 IM53_009335 IM53_015300 IM53_015300 IM53_015495 IM53_015495 IM53_015630 IM53_015630 IM53_018655 IM53_018655 dnaX dnaX IM53_001030 IM53_001030 IM53_000940 IM53_000940 IM53_003370 IM53_003370 uvrA uvrA radA radA ffh ffh IM53_013800 IM53_013800 IM53_013480 IM53_013480 IM53_013390 IM53_013390 pstB pstB IM53_013165 IM53_013165 IM53_017280 IM53_017280 IM53_017115 IM53_017115 hflB hflB recA recA IM53_002435 IM53_002435 IM53_002690 IM53_002690 IM53_002695 IM53_002695 ccmA ccmA ugpC ugpC lolD lolD msbA msbA der der IM53_008180 IM53_008180 IM53_008160 IM53_008160 IM53_008135 IM53_008135 IM53_007960 IM53_007960 IM53_006030 IM53_006030 IM53_021520 IM53_021520 potG potG ftsY ftsY IM53_019370 IM53_019370 IM53_019965 IM53_019965 IM53_020025 IM53_020025 IM53_020200 IM53_020200 IM53_020870 IM53_020870 ruvB ruvB IM53_021095 IM53_021095 clpB clpB IM53_005545 IM53_005545 lon lon clpX clpX cysA cysA IM53_004175 IM53_004175 IM53_004195 IM53_004195 IM53_004620 IM53_004620 hslU hslU IM53_016305 IM53_016305
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
IM53_012535Unannotated protein. (448 aa)
ntrCUnannotated protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (475 aa)
IM53_012315Unannotated protein. (245 aa)
IM53_012300Unannotated protein. (281 aa)
IM53_005025Unannotated protein. (597 aa)
IM53_010220Unannotated protein. (604 aa)
IM53_009475Unannotated protein. (331 aa)
IM53_009435Unannotated protein. (248 aa)
IM53_006630Unannotated protein. (728 aa)
IM53_006830Unannotated protein. (229 aa)
IM53_007020Unannotated protein. (506 aa)
rhoUnannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (624 aa)
ftsEUnannotated protein; Part of the ABC transporter FtsEX involved in cellular division. (228 aa)
IM53_010830Unannotated protein. (240 aa)
IM53_010750Unannotated protein. (591 aa)
IM53_010695Unannotated protein. (427 aa)
metNUnannotated protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (335 aa)
atpDUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (468 aa)
IM53_011745Unannotated protein. (447 aa)
IM53_011765Unannotated protein. (239 aa)
IM53_011940Unannotated protein. (448 aa)
IM53_012105Unannotated protein. (278 aa)
IM53_009620Unannotated protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (575 aa)
dnaAUnannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (442 aa)
IM53_004800Unannotated protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (495 aa)
IM53_000480Unannotated protein. (264 aa)
IM53_005870Unannotated protein. (373 aa)
IM53_009335Unannotated protein. (721 aa)
IM53_015300Unannotated protein. (923 aa)
IM53_015495Unannotated protein. (339 aa)
IM53_015630Unannotated protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (204 aa)
IM53_018655Unannotated protein. (446 aa)
dnaXUnannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (693 aa)
IM53_001030Unannotated protein. (317 aa)
IM53_000940Unannotated protein. (549 aa)
IM53_003370Unannotated protein. (718 aa)
uvrAUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (988 aa)
radAUnannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (463 aa)
ffhUnannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components; Belongs to t [...] (458 aa)
IM53_013800Unannotated protein. (626 aa)
IM53_013480Unannotated protein. (589 aa)
IM53_013390Unannotated protein. (291 aa)
pstBUnannotated protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (276 aa)
IM53_013165Unannotated protein. (537 aa)
IM53_017280Unannotated protein. (532 aa)
IM53_017115Unannotated protein. (572 aa)
hflBUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (646 aa)
recAUnannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (344 aa)
IM53_002435Unannotated protein. (629 aa)
IM53_002690Unannotated protein. (578 aa)
IM53_002695Unannotated protein. (561 aa)
ccmAUnannotated protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (214 aa)
ugpCUnannotated protein; Belongs to the ABC transporter superfamily. (362 aa)
lolDUnannotated protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. (244 aa)
msbAUnannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (589 aa)
derUnannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (465 aa)
IM53_008180Unannotated protein. (436 aa)
IM53_008160Unannotated protein. (785 aa)
IM53_008135Unannotated protein; Belongs to the ClpA/ClpB family. (760 aa)
IM53_007960Unannotated protein. (494 aa)
IM53_006030Unannotated protein. (458 aa)
IM53_021520Unannotated protein. (563 aa)
potGUnannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (377 aa)
ftsYUnannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. (537 aa)
IM53_019370Unannotated protein. (610 aa)
IM53_019965Unannotated protein. (345 aa)
IM53_020025Unannotated protein. (254 aa)
IM53_020200Unannotated protein. (239 aa)
IM53_020870Unannotated protein. (1373 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (346 aa)
IM53_021095Unannotated protein. (639 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (861 aa)
IM53_005545Unannotated protein. (464 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (823 aa)
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (428 aa)
cysAUnannotated protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (348 aa)
IM53_004175Unannotated protein. (201 aa)
IM53_004195Unannotated protein. (277 aa)
IM53_004620Unannotated protein. (553 aa)
hslUUnannotated protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (447 aa)
IM53_016305Unannotated protein. (442 aa)
Your Current Organism:
Xanthomonas phaseoli
NCBI taxonomy Id: 1437877
Other names: X. phaseoli pv. dieffenbachiae LMG 695, Xanthomonas axonopodis pv. dieffenbachiae LMG 695, Xanthomonas phaseoli pv. dieffenbachiae LMG 695
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