(47 nodes) Zinc finger, RING-type network (Talaromyces atroroseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UA08_02640	RING-box protein 1. (120 aa)
	UA08_09473	RING-type domain-containing protein. (232 aa)
	UA08_09492	Uncharacterized protein. (530 aa)
	UA08_09158	RING-type domain-containing protein. (265 aa)
	UA08_08542	RING-type domain-containing protein. (545 aa)
	UA08_03975	RING-type domain-containing protein. (917 aa)
	UA08_04355	Uncharacterized protein. (761 aa)
	UA08_01248	Uncharacterized protein. (854 aa)
	UA08_01383	RBR-type E3 ubiquitin transferase. (667 aa)
	UA08_01437	Uncharacterized protein. (1430 aa)
	UA08_01200	Uncharacterized protein. (534 aa)
	UA08_07593	RING-type domain-containing protein. (830 aa)
	UA08_07851	RING-type domain-containing protein. (424 aa)
	UA08_07212	RING-type domain-containing protein. (2150 aa)
	UA08_06577	Uncharacterized protein. (594 aa)
	UA08_06648	Uncharacterized protein. (629 aa)
	UA08_06974	RING-type domain-containing protein. (1222 aa)
	UA08_07981	RING-type domain-containing protein. (359 aa)
	UA08_05339	Uncharacterized protein. (413 aa)
	UA08_06971	Postreplication repair E3 ubiquitin-protein ligase rad18. (423 aa)
	UA08_07628	Uncharacterized protein. (597 aa)
	UA08_04799	Polyubiquitin. (1035 aa)
	UA08_03534	DNA repair protein rad5. (1364 aa)
	UA08_03628	RING-type domain-containing protein. (437 aa)
	UA08_03810	Uncharacterized protein. (1320 aa)
	UA08_07269	RING-type domain-containing protein. (465 aa)
	UA08_02437	RING-type domain-containing protein. (778 aa)
	UA08_02575	RING-type domain-containing protein. (543 aa)
	UA08_03921	Uncharacterized protein. (977 aa)
	UA08_08270	RING-type domain-containing protein. (376 aa)
	UA08_03301	Uncharacterized protein. (1163 aa)
	UA08_07044	Pre-mRNA-splicing factor cwc24. (345 aa)
	UA08_00027	Uncharacterized protein. (2152 aa)
	UA08_00214	Uncharacterized protein. (803 aa)
	UA08_00191	RING-type domain-containing protein. (458 aa)
	UA08_04879	Uncharacterized protein. (1285 aa)
	UA08_06536	Uncharacterized protein. (929 aa)
	UA08_03637	RING-CH-type domain-containing protein. (1611 aa)
	UA08_00924	RING-type domain-containing protein. (1572 aa)
	UA08_03538	RING-type domain-containing protein. (203 aa)
	UA08_07750	RING-type domain-containing protein. (763 aa)
	UA08_02996	Uncharacterized protein. (569 aa)
	UA08_05745	Uncharacterized protein. (231 aa)
	UA08_05885	RING-type domain-containing protein. (736 aa)
	UA08_05344	RING-type domain-containing protein. (529 aa)
	UA08_02146	RING-type domain-containing protein. (799 aa)
	UA08_03884	RING-type domain-containing protein. (393 aa)

Your Current Organism:

Talaromyces atroroseus

NCBI taxonomy Id: 1441469
Other names: CBS 133442, DTO 178A4, IBT 32470, KAS 3778, T. atroroseus, Talaromyces atroroseus Yilmaz, Frisvad, Houbraken & Samson, 2013

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UA08_00027	UA08_00214	A0A225ARW9	A0A225AS60	Uncharacterized protein.	Uncharacterized protein.	0.410
UA08_00027	UA08_02640	A0A225ARW9	A0A225B8V2	Uncharacterized protein.	RING-box protein 1.	0.572
UA08_00027	UA08_02996	A0A225ARW9	A0A225AUT6	Uncharacterized protein.	Uncharacterized protein.	0.420
UA08_00027	UA08_03301	A0A225ARW9	A0A225AR56	Uncharacterized protein.	Uncharacterized protein.	0.431
UA08_00027	UA08_03534	A0A225ARW9	A0A225AHA2	Uncharacterized protein.	DNA repair protein rad5.	0.435
UA08_00027	UA08_03921	A0A225ARW9	A0A225ANG1	Uncharacterized protein.	Uncharacterized protein.	0.415
UA08_00027	UA08_04799	A0A225ARW9	A0A225AGY3	Uncharacterized protein.	Polyubiquitin.	0.749
UA08_00027	UA08_06971	A0A225ARW9	A0A225AF20	Uncharacterized protein.	Postreplication repair E3 ubiquitin-protein ligase rad18.	0.867
UA08_00191	UA08_04799	A0A225AS69	A0A225AGY3	RING-type domain-containing protein.	Polyubiquitin.	0.912
UA08_00214	UA08_00027	A0A225AS60	A0A225ARW9	Uncharacterized protein.	Uncharacterized protein.	0.410
UA08_00214	UA08_02640	A0A225AS60	A0A225B8V2	Uncharacterized protein.	RING-box protein 1.	0.572
UA08_00214	UA08_03921	A0A225AS60	A0A225ANG1	Uncharacterized protein.	Uncharacterized protein.	0.400
UA08_00214	UA08_04799	A0A225AS60	A0A225AGY3	Uncharacterized protein.	Polyubiquitin.	0.643
UA08_00214	UA08_06971	A0A225AS60	A0A225AF20	Uncharacterized protein.	Postreplication repair E3 ubiquitin-protein ligase rad18.	0.818
UA08_00924	UA08_02437	A0A225BC97	A0A225ALJ8	RING-type domain-containing protein.	RING-type domain-containing protein.	0.622
UA08_00924	UA08_04799	A0A225BC97	A0A225AGY3	RING-type domain-containing protein.	Polyubiquitin.	0.634
UA08_01248	UA08_04799	A0A1Q5Q9K6	A0A225AGY3	Uncharacterized protein.	Polyubiquitin.	0.912
UA08_02437	UA08_00924	A0A225ALJ8	A0A225BC97	RING-type domain-containing protein.	RING-type domain-containing protein.	0.622
UA08_02575	UA08_04799	A0A225ALM9	A0A225AGY3	RING-type domain-containing protein.	Polyubiquitin.	0.825
UA08_02640	UA08_00027	A0A225B8V2	A0A225ARW9	RING-box protein 1.	Uncharacterized protein.	0.572

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