(33 nodes) Fimbrial usher porin activity network (Chania multitudinisentens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHG21157.2	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (836 aa)
	AJW28928.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (860 aa)
	AHG22483.2	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (824 aa)
	AHG22482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	AHG22481.1	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AHG21887.1	Exotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	AHG21882.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AHG21881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AHG21411.2	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (828 aa)
	AHG22868.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	AHG20869.2	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (864 aa)
	AHG22841.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	AHG20594.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)
	AHG20259.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AHG20039.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
	AHG20037.1	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	AHG22742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AHG20034.2	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AHG19983.2	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (836 aa)
	AHG19500.2	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AHG19338.1	Pilus assembly protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology. (867 aa)
	AHG19337.2	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AHG19273.2	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	AHG19167.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AHG19166.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AHG19161.1	Exotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	AHG18915.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (863 aa)
	AHG18670.1	Pilus assembly protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AHG18616.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
	AHG18610.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (864 aa)
	AHG18588.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (790 aa)
	AHG22567.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)
	AHG18373.1	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (860 aa)

Your Current Organism:

Chania multitudinisentens

NCBI taxonomy Id: 1441930
Other names: C. multitudinisentens RB-25, Chania multitudinisentens RB-25

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHG18373.1	AHG19161.1	Z042_00955	Z042_05690	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AHG18373.1	AHG19167.1	Z042_00955	Z042_05720	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AHG18373.1	AHG20037.1	Z042_00955	Z042_10630	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AHG18373.1	AHG21881.1	Z042_00955	Z042_21405	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AHG18373.1	AHG22481.1	Z042_00955	Z042_24880	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
AHG18373.1	AHG22742.1	Z042_00955	Z042_10590	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AHG18373.1	AHG22868.1	Z042_00955	Z042_16165	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AHG18588.1	AHG19161.1	Z042_02330	Z042_05690	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exotoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AHG18588.1	AHG19167.1	Z042_02330	Z042_05720	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AHG18588.1	AHG20037.1	Z042_02330	Z042_10630	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
AHG18588.1	AHG21881.1	Z042_02330	Z042_21405	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
AHG18588.1	AHG22481.1	Z042_02330	Z042_24880	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AHG18588.1	AHG22742.1	Z042_02330	Z042_10590	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AHG18588.1	AHG22868.1	Z042_02330	Z042_16165	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AHG18610.1	AHG19167.1	Z042_02475	Z042_05720	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AHG18610.1	AHG20037.1	Z042_02475	Z042_10630	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AHG18610.1	AHG21881.1	Z042_02475	Z042_21405	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AHG18610.1	AHG22481.1	Z042_02475	Z042_24880	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbria A protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AHG18610.1	AHG22742.1	Z042_02475	Z042_10590	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
AHG18610.1	AHG22868.1	Z042_02475	Z042_16165	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841