Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHG18386.1 | AHG18387.1 | Z042_01030 | Z042_01035 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nitrite reductase; Possible subunit of a heme lyase. | 0.976 |
| AHG18386.1 | AHG18388.2 | Z042_01030 | Z042_01040 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.972 |
| AHG18386.1 | AHG18828.1 | Z042_01030 | Z042_03795 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Thiol:disulfide interchange protein DsbE; Cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.881 |
| AHG18386.1 | AHG18829.1 | Z042_01030 | Z042_03800 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.883 |
| AHG18386.1 | AHG18831.1 | Z042_01030 | Z042_03810 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.485 |
| AHG18386.1 | AHG18833.1 | Z042_01030 | Z042_03820 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Heme ABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.533 |
| AHG18386.1 | AJW28919.1 | Z042_01030 | Z042_25850 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cytochrome C; Possible subunit of a heme lyase. | 0.745 |
| AHG18386.1 | ccmA | Z042_01030 | Z042_03825 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cytochrome C biogenesis protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.489 |
| AHG18386.1 | ccmC | Z042_01030 | Z042_03815 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Heme ABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.525 |
| AHG18386.1 | ccmE | Z042_01030 | Z042_03805 | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cytochrome C biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.540 |
| AHG18387.1 | AHG18386.1 | Z042_01035 | Z042_01030 | Nitrite reductase; Possible subunit of a heme lyase. | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.976 |
| AHG18387.1 | AHG18388.2 | Z042_01035 | Z042_01040 | Nitrite reductase; Possible subunit of a heme lyase. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.978 |
| AHG18387.1 | AHG18828.1 | Z042_01035 | Z042_03795 | Nitrite reductase; Possible subunit of a heme lyase. | Thiol:disulfide interchange protein DsbE; Cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.878 |
| AHG18387.1 | AHG18829.1 | Z042_01035 | Z042_03800 | Nitrite reductase; Possible subunit of a heme lyase. | Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.898 |
| AHG18387.1 | AHG18831.1 | Z042_01035 | Z042_03810 | Nitrite reductase; Possible subunit of a heme lyase. | Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.449 |
| AHG18387.1 | AHG18833.1 | Z042_01035 | Z042_03820 | Nitrite reductase; Possible subunit of a heme lyase. | Heme ABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.838 |
| AHG18387.1 | ccmA | Z042_01035 | Z042_03825 | Nitrite reductase; Possible subunit of a heme lyase. | Cytochrome C biogenesis protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.835 |
| AHG18387.1 | ccmC | Z042_01035 | Z042_03815 | Nitrite reductase; Possible subunit of a heme lyase. | Heme ABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.838 |
| AHG18387.1 | ccmE | Z042_01035 | Z042_03805 | Nitrite reductase; Possible subunit of a heme lyase. | Cytochrome C biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.848 |
| AHG18388.2 | AHG18386.1 | Z042_01040 | Z042_01030 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.972 |
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