(12 nodes) PAS domain superfamily network (Chania multitudinisentens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phoR	Phosphate regulon sensor protein; Membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	AHG18218.1	Transcriptional regulator; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	AHG18490.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AHG18837.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (894 aa)
	AHG18839.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)
	AHG18990.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1113 aa)
	AHG19745.1	Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AHG20079.1	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
	AHG21013.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1212 aa)
	AHG21287.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1526 aa)
	AHG21292.1	Sensor protein ZraS; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	AHG21383.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)

Your Current Organism:

Chania multitudinisentens

NCBI taxonomy Id: 1441930
Other names: C. multitudinisentens RB-25, Chania multitudinisentens RB-25

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHG18490.1	AHG21013.1	Z042_01695	Z042_16455	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AHG18837.2	AHG18839.1	Z042_03855	Z042_03865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AHG18837.2	AHG18990.1	Z042_03855	Z042_04755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AHG18837.2	AHG19745.1	Z042_03855	Z042_09010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AHG18837.2	AHG20079.1	Z042_03855	Z042_10900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AHG18837.2	AHG21013.1	Z042_03855	Z042_16455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AHG18837.2	AHG21287.1	Z042_03855	Z042_18015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AHG18837.2	AHG21292.1	Z042_03855	Z042_18040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor protein ZraS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AHG18837.2	AHG21383.1	Z042_03855	Z042_18560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AHG18837.2	phoR	Z042_03855	Z042_18625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate regulon sensor protein; Membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AHG18839.1	AHG18837.2	Z042_03865	Z042_03855	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AHG18839.1	AHG18990.1	Z042_03865	Z042_04755	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AHG18839.1	AHG19745.1	Z042_03865	Z042_09010	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AHG18839.1	AHG20079.1	Z042_03865	Z042_10900	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AHG18839.1	AHG21013.1	Z042_03865	Z042_16455	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AHG18839.1	AHG21287.1	Z042_03865	Z042_18015	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AHG18839.1	AHG21383.1	Z042_03865	Z042_18560	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AHG18839.1	phoR	Z042_03865	Z042_18625	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate regulon sensor protein; Membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AHG18990.1	AHG18837.2	Z042_04755	Z042_03855	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AHG18990.1	AHG18839.1	Z042_04755	Z042_03865	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916