(7 nodes) Mixed, incl. VCP-NPL4-UFD1 AAA ATPase complex, and Ubiquitin family network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000000794	Ubiquitin-like domain-containing protein. (77 aa)
	UBB	Ubiquitin B. (258 aa)
	ubxn7	UBX domain protein 7. (539 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (310 aa)
	nploc4	NPL4 homolog, ubiquitin recognition factor. (614 aa)
	ubqln4	Ubiquilin 4. (599 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (748 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000000794	UBB	ENSSPAP00000000794	ENSSPAP00000003565	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.992
ENSSPAP00000000794	nploc4	ENSSPAP00000000794	ENSSPAP00000020866	Ubiquitin-like domain-containing protein.	NPL4 homolog, ubiquitin recognition factor.	0.945
ENSSPAP00000000794	spata5l1	ENSSPAP00000000794	ENSSPAP00000026121	Ubiquitin-like domain-containing protein.	Spermatogenesis associated 5-like 1.	0.829
ENSSPAP00000000794	ubqln4	ENSSPAP00000000794	ENSSPAP00000021012	Ubiquitin-like domain-containing protein.	Ubiquilin 4.	0.968
ENSSPAP00000000794	ubxn7	ENSSPAP00000000794	ENSSPAP00000011861	Ubiquitin-like domain-containing protein.	UBX domain protein 7.	0.986
ENSSPAP00000000794	ufd1	ENSSPAP00000000794	ENSSPAP00000020563	Ubiquitin-like domain-containing protein.	Ubiquitin recognition factor in ER associated degradation 1.	0.881
UBB	ENSSPAP00000000794	ENSSPAP00000003565	ENSSPAP00000000794	Ubiquitin B.	Ubiquitin-like domain-containing protein.	0.992
UBB	nploc4	ENSSPAP00000003565	ENSSPAP00000020866	Ubiquitin B.	NPL4 homolog, ubiquitin recognition factor.	0.979
UBB	spata5l1	ENSSPAP00000003565	ENSSPAP00000026121	Ubiquitin B.	Spermatogenesis associated 5-like 1.	0.956
UBB	ubqln4	ENSSPAP00000003565	ENSSPAP00000021012	Ubiquitin B.	Ubiquilin 4.	0.988
UBB	ubxn7	ENSSPAP00000003565	ENSSPAP00000011861	Ubiquitin B.	UBX domain protein 7.	0.995
UBB	ufd1	ENSSPAP00000003565	ENSSPAP00000020563	Ubiquitin B.	Ubiquitin recognition factor in ER associated degradation 1.	0.986
nploc4	ENSSPAP00000000794	ENSSPAP00000020866	ENSSPAP00000000794	NPL4 homolog, ubiquitin recognition factor.	Ubiquitin-like domain-containing protein.	0.945
nploc4	UBB	ENSSPAP00000020866	ENSSPAP00000003565	NPL4 homolog, ubiquitin recognition factor.	Ubiquitin B.	0.979
nploc4	spata5l1	ENSSPAP00000020866	ENSSPAP00000026121	NPL4 homolog, ubiquitin recognition factor.	Spermatogenesis associated 5-like 1.	0.942
nploc4	ubqln4	ENSSPAP00000020866	ENSSPAP00000021012	NPL4 homolog, ubiquitin recognition factor.	Ubiquilin 4.	0.804
nploc4	ubxn7	ENSSPAP00000020866	ENSSPAP00000011861	NPL4 homolog, ubiquitin recognition factor.	UBX domain protein 7.	0.999
nploc4	ufd1	ENSSPAP00000020866	ENSSPAP00000020563	NPL4 homolog, ubiquitin recognition factor.	Ubiquitin recognition factor in ER associated degradation 1.	0.993
spata5l1	ENSSPAP00000000794	ENSSPAP00000026121	ENSSPAP00000000794	Spermatogenesis associated 5-like 1.	Ubiquitin-like domain-containing protein.	0.829
spata5l1	UBB	ENSSPAP00000026121	ENSSPAP00000003565	Spermatogenesis associated 5-like 1.	Ubiquitin B.	0.956