42 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rinl	Uncharacterized protein. (641 aa)
	LOC103358789	Zgc:77486. (218 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	LOC103372209	Ras and Rab interactor 2. (1110 aa)
	LOC103366057	Si:dkeyp-19e1.3. (826 aa)
	zfand5	Zinc finger, AN1-type domain 5a. (208 aa)
	LOC103366651	Uncharacterized protein. (470 aa)
	ENSSPAP00000005103	VHS domain-containing protein. (79 aa)
	ENSSPAP00000005564	Si:ch211-168d1.3. (726 aa)
	rabgap1	RAB GTPase activating protein 1. (1081 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (861 aa)
	rab24	RAB24, member RAS oncogene family. (204 aa)
	rab20	RAB20, member RAS oncogene family. (232 aa)
	LOC103367270	VPS9 domain-containing protein. (1015 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1565 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC103374105	Rab-GAP TBC domain-containing protein. (581 aa)
	ENSSPAP00000010035	Uncharacterized protein. (528 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	eea1	Early endosome antigen 1. (1395 aa)
	rabep2	Rabaptin, RAB GTPase binding effector protein 2. (457 aa)
	TOM1L2	Target of myb1 like 2 membrane trafficking protein. (554 aa)
	ENSSPAP00000014376	Uncharacterized protein. (199 aa)
	LOC103369625	Uncharacterized protein. (622 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1474 aa)
	rab5a	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC103369712	Uncharacterized protein. (224 aa)
	tom1l2	Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family. (542 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (696 aa)
	RIN2	Ras and Rab interactor 2. (962 aa)
	LOC103376428	RAB5A, member RAS oncogene family, a. (216 aa)
	LOC103367528	RAB5B, member RAS oncogene family. (216 aa)
	LOC103355945	Uncharacterized protein. (664 aa)
	usp6nl	USP6 N-terminal like. (916 aa)
	LOC103362517	Uncharacterized protein. (252 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (943 aa)
	ZFAND3	Zinc finger AN1-type containing 3. (230 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (632 aa)
	LOC103354887	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (750 aa)
	m6pr	Mannose-6-phosphate receptor (cation dependent). (277 aa)
	LOC103364286	Uncharacterized protein. (1051 aa)
	LOC103370946	Uncharacterized protein. (224 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000005103	GGA1	ENSSPAP00000005103	ENSSPAP00000026194	VHS domain-containing protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.647
ENSSPAP00000005103	LOC103355945	ENSSPAP00000005103	ENSSPAP00000022806	VHS domain-containing protein.	Uncharacterized protein.	0.647
ENSSPAP00000005103	LOC103357827	ENSSPAP00000005103	ENSSPAP00000012078	VHS domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.647
ENSSPAP00000005103	LOC103366651	ENSSPAP00000005103	ENSSPAP00000004437	VHS domain-containing protein.	Uncharacterized protein.	0.647
ENSSPAP00000005103	LOC103369625	ENSSPAP00000005103	ENSSPAP00000015484	VHS domain-containing protein.	Uncharacterized protein.	0.647
ENSSPAP00000005103	m6pr	ENSSPAP00000005103	ENSSPAP00000028697	VHS domain-containing protein.	Mannose-6-phosphate receptor (cation dependent).	0.598
ENSSPAP00000005103	rabep1	ENSSPAP00000005103	ENSSPAP00000006948	VHS domain-containing protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.631
ENSSPAP00000005103	rabep2	ENSSPAP00000005103	ENSSPAP00000014236	VHS domain-containing protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.631
ENSSPAP00000005103	rabgef1	ENSSPAP00000005103	ENSSPAP00000001267	VHS domain-containing protein.	Uncharacterized protein.	0.647
ENSSPAP00000005564	ENSSPAP00000010035	ENSSPAP00000005564	ENSSPAP00000010035	Si:ch211-168d1.3.	Uncharacterized protein.	0.556
ENSSPAP00000005564	LOC103357827	ENSSPAP00000005564	ENSSPAP00000012078	Si:ch211-168d1.3.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.744
ENSSPAP00000005564	LOC103364286	ENSSPAP00000005564	ENSSPAP00000028980	Si:ch211-168d1.3.	Uncharacterized protein.	0.624
ENSSPAP00000005564	LOC103366651	ENSSPAP00000005564	ENSSPAP00000004437	Si:ch211-168d1.3.	Uncharacterized protein.	0.723
ENSSPAP00000005564	LOC103367270	ENSSPAP00000005564	ENSSPAP00000007592	Si:ch211-168d1.3.	VPS9 domain-containing protein.	0.613
ENSSPAP00000005564	LOC103367528	ENSSPAP00000005564	ENSSPAP00000022331	Si:ch211-168d1.3.	RAB5B, member RAS oncogene family.	0.770
ENSSPAP00000005564	LOC103369712	ENSSPAP00000005564	ENSSPAP00000018530	Si:ch211-168d1.3.	Uncharacterized protein.	0.770
ENSSPAP00000005564	LOC103370946	ENSSPAP00000005564	ENSSPAP00000030105	Si:ch211-168d1.3.	Uncharacterized protein.	0.770
ENSSPAP00000005564	LOC103376428	ENSSPAP00000005564	ENSSPAP00000020790	Si:ch211-168d1.3.	RAB5A, member RAS oncogene family, a.	0.770
ENSSPAP00000005564	als2	ENSSPAP00000005564	ENSSPAP00000007847	Si:ch211-168d1.3.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.647
ENSSPAP00000005564	eea1	ENSSPAP00000005564	ENSSPAP00000013406	Si:ch211-168d1.3.	Early endosome antigen 1.	0.402