7 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103366651	Uncharacterized protein. (470 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (861 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	rabep2	Rabaptin, RAB GTPase binding effector protein 2. (457 aa)
	LOC103369625	Uncharacterized protein. (622 aa)
	LOC103355945	Uncharacterized protein. (664 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (632 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GGA1	LOC103355945	ENSSPAP00000026194	ENSSPAP00000022806	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Uncharacterized protein.	0.804
GGA1	LOC103357827	ENSSPAP00000026194	ENSSPAP00000012078	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.988
GGA1	LOC103366651	ENSSPAP00000026194	ENSSPAP00000004437	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Uncharacterized protein.	0.988
GGA1	LOC103369625	ENSSPAP00000026194	ENSSPAP00000015484	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Uncharacterized protein.	0.902
GGA1	rabep1	ENSSPAP00000026194	ENSSPAP00000006948	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Rabaptin, RAB GTPase binding effector protein 1.	0.938
GGA1	rabep2	ENSSPAP00000026194	ENSSPAP00000014236	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Rabaptin, RAB GTPase binding effector protein 2.	0.838
LOC103355945	GGA1	ENSSPAP00000022806	ENSSPAP00000026194	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.804
LOC103355945	LOC103357827	ENSSPAP00000022806	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.988
LOC103355945	LOC103366651	ENSSPAP00000022806	ENSSPAP00000004437	Uncharacterized protein.	Uncharacterized protein.	0.988
LOC103355945	LOC103369625	ENSSPAP00000022806	ENSSPAP00000015484	Uncharacterized protein.	Uncharacterized protein.	0.823
LOC103355945	rabep1	ENSSPAP00000022806	ENSSPAP00000006948	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.938
LOC103355945	rabep2	ENSSPAP00000022806	ENSSPAP00000014236	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.838
LOC103357827	GGA1	ENSSPAP00000012078	ENSSPAP00000026194	RAB guanine nucleotide exchange factor (GEF) 1, like.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.988
LOC103357827	LOC103355945	ENSSPAP00000012078	ENSSPAP00000022806	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.988
LOC103357827	LOC103366651	ENSSPAP00000012078	ENSSPAP00000004437	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.685
LOC103357827	LOC103369625	ENSSPAP00000012078	ENSSPAP00000015484	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.988
LOC103357827	rabep1	ENSSPAP00000012078	ENSSPAP00000006948	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
LOC103357827	rabep2	ENSSPAP00000012078	ENSSPAP00000014236	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 2.	0.999
LOC103366651	GGA1	ENSSPAP00000004437	ENSSPAP00000026194	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.988
LOC103366651	LOC103355945	ENSSPAP00000004437	ENSSPAP00000022806	Uncharacterized protein.	Uncharacterized protein.	0.988