58 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lama5	Laminin, alpha 5. (3599 aa)
	tnn	Tenascin N. (1121 aa)
	ENSSPAP00000001228	Uncharacterized protein. (546 aa)
	ENSSPAP00000001331	Uncharacterized protein. (887 aa)
	ENSSPAP00000001368	Uncharacterized protein. (350 aa)
	LOC103366621	Laminin, beta 1a. (1724 aa)
	LOC103368896	Protein tyrosine kinase 2. (916 aa)
	LOC103372823	Integrin, alpha 6b; Belongs to the integrin alpha chain family. (1086 aa)
	LOC103364929	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	itga8	Integrin, alpha 8; Belongs to the integrin alpha chain family. (1055 aa)
	comp	Cartilage oligomeric matrix protein. (749 aa)
	lama4	Laminin, alpha 4. (1856 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	LOC103361671	VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1130 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	ENSSPAP00000007814	Uncharacterized protein. (227 aa)
	LOC103370624	Uncharacterized protein. (1669 aa)
	itga6	Integrin, alpha 6a; Belongs to the integrin alpha chain family. (1095 aa)
	itgav	Integrin, alpha V; Belongs to the integrin alpha chain family. (750 aa)
	chad	Chondroadherin. (363 aa)
	LOC103372955	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1056 aa)
	itga11	Integrin, alpha 11a; Belongs to the integrin alpha chain family. (1180 aa)
	tnr	Tenascin R (restrictin, janusin). (1093 aa)
	itga2	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family. (1185 aa)
	lamc2	Laminin subunit gamma 2. (1022 aa)
	lamc1	Laminin, gamma 1. (1593 aa)
	LOC103362295	Vitronectin b. (446 aa)
	LOC103366332	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1053 aa)
	itgb4	Integrin beta. (1992 aa)
	itga1	Integrin, alpha 1; Belongs to the integrin alpha chain family. (1187 aa)
	itga2b	Integrin, alpha 2b; Belongs to the integrin alpha chain family. (1011 aa)
	col9a3	Collagen, type IX, alpha 3. (680 aa)
	ENSSPAP00000018240	Uncharacterized protein. (124 aa)
	ENSSPAP00000019126	Laminin N-terminal domain-containing protein. (293 aa)
	LAMA2	Laminin subunit alpha 2. (3059 aa)
	LOC103364103	Laminin, beta 1b. (1818 aa)
	ENSSPAP00000020470	Fibronectin type-III domain-containing protein. (106 aa)
	LOC103376046	Vitronectin a. (515 aa)
	LOC103366491	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	LOC103366961	Integrin beta. (429 aa)
	ENSSPAP00000021246	Integrin_b_cyt domain-containing protein. (110 aa)
	thbs3	Thrombospondin 3a. (951 aa)
	LOC103374965	Zmp:0000000846. (2380 aa)
	ENSSPAP00000024618	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	LOC103365860	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family. (1057 aa)
	LOC103365304	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	ITGA7	Integrin subunit alpha 7; Belongs to the integrin alpha chain family. (1075 aa)
	LOC103365319	Laminin, gamma 3. (1501 aa)
	itga9	Integrin, alpha 9; Belongs to the integrin alpha chain family. (1031 aa)
	LOC103356464	Tenascin C. (1729 aa)
	lamb2	Laminin, beta 2 (laminin S). (1765 aa)
	LOC103362005	Laminin, beta 2-like. (1842 aa)
	thbs2	Thrombospondin 2a. (1185 aa)
	itga10	Integrin, alpha 10; Belongs to the integrin alpha chain family. (1171 aa)
	ENSSPAP00000030349	Fibrinogen C-terminal domain-containing protein. (370 aa)
	ENSSPAP00000030521	Uncharacterized protein. (555 aa)
	ENSSPAP00000030531	Si:ch211-241e1.3. (1772 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000001228	ENSSPAP00000001368	ENSSPAP00000001228	ENSSPAP00000001368	Uncharacterized protein.	Uncharacterized protein.	0.947
ENSSPAP00000001228	ENSSPAP00000018240	ENSSPAP00000001228	ENSSPAP00000018240	Uncharacterized protein.	Uncharacterized protein.	0.814
ENSSPAP00000001228	ENSSPAP00000019126	ENSSPAP00000001228	ENSSPAP00000019126	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.540
ENSSPAP00000001228	ENSSPAP00000021246	ENSSPAP00000001228	ENSSPAP00000021246	Uncharacterized protein.	Integrin_b_cyt domain-containing protein.	0.726
ENSSPAP00000001228	ENSSPAP00000024618	ENSSPAP00000001228	ENSSPAP00000024618	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.852
ENSSPAP00000001228	ENSSPAP00000030521	ENSSPAP00000001228	ENSSPAP00000030521	Uncharacterized protein.	Uncharacterized protein.	0.682
ENSSPAP00000001228	ENSSPAP00000030531	ENSSPAP00000001228	ENSSPAP00000030531	Uncharacterized protein.	Si:ch211-241e1.3.	0.762
ENSSPAP00000001228	ITGA7	ENSSPAP00000001228	ENSSPAP00000027134	Uncharacterized protein.	Integrin subunit alpha 7; Belongs to the integrin alpha chain family.	0.739
ENSSPAP00000001228	LAMA2	ENSSPAP00000001228	ENSSPAP00000019401	Uncharacterized protein.	Laminin subunit alpha 2.	0.878
ENSSPAP00000001228	LOC103361671	ENSSPAP00000001228	ENSSPAP00000007141	Uncharacterized protein.	VWFA domain-containing protein; Belongs to the integrin alpha chain family.	0.726
ENSSPAP00000001228	LOC103362005	ENSSPAP00000001228	ENSSPAP00000029046	Uncharacterized protein.	Laminin, beta 2-like.	0.645
ENSSPAP00000001228	LOC103364103	ENSSPAP00000001228	ENSSPAP00000020328	Uncharacterized protein.	Laminin, beta 1b.	0.645
ENSSPAP00000001228	LOC103364929	ENSSPAP00000001228	ENSSPAP00000003970	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.755
ENSSPAP00000001228	LOC103365304	ENSSPAP00000001228	ENSSPAP00000026648	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.618
ENSSPAP00000001228	LOC103365319	ENSSPAP00000001228	ENSSPAP00000027301	Uncharacterized protein.	Laminin, gamma 3.	0.677
ENSSPAP00000001228	LOC103365860	ENSSPAP00000001228	ENSSPAP00000025365	Uncharacterized protein.	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.	0.618
ENSSPAP00000001228	LOC103366332	ENSSPAP00000001228	ENSSPAP00000014423	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.618
ENSSPAP00000001228	LOC103366491	ENSSPAP00000001228	ENSSPAP00000021080	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.755
ENSSPAP00000001228	LOC103366621	ENSSPAP00000001228	ENSSPAP00000003518	Uncharacterized protein.	Laminin, beta 1a.	0.703
ENSSPAP00000001228	LOC103366961	ENSSPAP00000001228	ENSSPAP00000021159	Uncharacterized protein.	Integrin beta.	0.726