30 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnn	Tenascin N. (1121 aa)
	LOC103372823	Integrin, alpha 6b; Belongs to the integrin alpha chain family. (1086 aa)
	LOC103364929	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	itga8	Integrin, alpha 8; Belongs to the integrin alpha chain family. (1055 aa)
	comp	Cartilage oligomeric matrix protein. (749 aa)
	itga6	Integrin, alpha 6a; Belongs to the integrin alpha chain family. (1095 aa)
	itgav	Integrin, alpha V; Belongs to the integrin alpha chain family. (750 aa)
	chad	Chondroadherin. (363 aa)
	itga11	Integrin, alpha 11a; Belongs to the integrin alpha chain family. (1180 aa)
	tnr	Tenascin R (restrictin, janusin). (1093 aa)
	itga2	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family. (1185 aa)
	LOC103362295	Vitronectin b. (446 aa)
	itgb4	Integrin beta. (1992 aa)
	itga1	Integrin, alpha 1; Belongs to the integrin alpha chain family. (1187 aa)
	itga2b	Integrin, alpha 2b; Belongs to the integrin alpha chain family. (1011 aa)
	ENSSPAP00000020470	Fibronectin type-III domain-containing protein. (106 aa)
	LOC103376046	Vitronectin a. (515 aa)
	LOC103366491	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	LOC103366961	Integrin beta. (429 aa)
	ENSSPAP00000021246	Integrin_b_cyt domain-containing protein. (110 aa)
	LOC103374965	Zmp:0000000846. (2380 aa)
	ENSSPAP00000024618	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	LOC103365860	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family. (1057 aa)
	LOC103365304	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	itga9	Integrin, alpha 9; Belongs to the integrin alpha chain family. (1031 aa)
	LOC103356464	Tenascin C. (1729 aa)
	thbs2	Thrombospondin 2a. (1185 aa)
	itga10	Integrin, alpha 10; Belongs to the integrin alpha chain family. (1171 aa)
	ENSSPAP00000030349	Fibrinogen C-terminal domain-containing protein. (370 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000020470	ENSSPAP00000021246	ENSSPAP00000020470	ENSSPAP00000021246	Fibronectin type-III domain-containing protein.	Integrin_b_cyt domain-containing protein.	0.912
ENSSPAP00000020470	ENSSPAP00000024618	ENSSPAP00000020470	ENSSPAP00000024618	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.949
ENSSPAP00000020470	LOC103356464	ENSSPAP00000020470	ENSSPAP00000027792	Fibronectin type-III domain-containing protein.	Tenascin C.	0.426
ENSSPAP00000020470	LOC103362295	ENSSPAP00000020470	ENSSPAP00000013585	Fibronectin type-III domain-containing protein.	Vitronectin b.	0.400
ENSSPAP00000020470	LOC103364929	ENSSPAP00000020470	ENSSPAP00000003970	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.933
ENSSPAP00000020470	LOC103365304	ENSSPAP00000020470	ENSSPAP00000026648	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.876
ENSSPAP00000020470	LOC103365860	ENSSPAP00000020470	ENSSPAP00000025365	Fibronectin type-III domain-containing protein.	Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.	0.841
ENSSPAP00000020470	LOC103366491	ENSSPAP00000020470	ENSSPAP00000021080	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.933
ENSSPAP00000020470	LOC103366961	ENSSPAP00000020470	ENSSPAP00000021159	Fibronectin type-III domain-containing protein.	Integrin beta.	0.912
ENSSPAP00000020470	LOC103372823	ENSSPAP00000020470	ENSSPAP00000003940	Fibronectin type-III domain-containing protein.	Integrin, alpha 6b; Belongs to the integrin alpha chain family.	0.808
ENSSPAP00000020470	LOC103374965	ENSSPAP00000020470	ENSSPAP00000023698	Fibronectin type-III domain-containing protein.	Zmp:0000000846.	0.426
ENSSPAP00000020470	LOC103376046	ENSSPAP00000020470	ENSSPAP00000020644	Fibronectin type-III domain-containing protein.	Vitronectin a.	0.400
ENSSPAP00000020470	comp	ENSSPAP00000020470	ENSSPAP00000004339	Fibronectin type-III domain-containing protein.	Cartilage oligomeric matrix protein.	0.423
ENSSPAP00000020470	itga1	ENSSPAP00000020470	ENSSPAP00000015350	Fibronectin type-III domain-containing protein.	Integrin, alpha 1; Belongs to the integrin alpha chain family.	0.867
ENSSPAP00000020470	itga10	ENSSPAP00000020470	ENSSPAP00000029967	Fibronectin type-III domain-containing protein.	Integrin, alpha 10; Belongs to the integrin alpha chain family.	0.850
ENSSPAP00000020470	itga11	ENSSPAP00000020470	ENSSPAP00000011006	Fibronectin type-III domain-containing protein.	Integrin, alpha 11a; Belongs to the integrin alpha chain family.	0.822
ENSSPAP00000020470	itga2	ENSSPAP00000020470	ENSSPAP00000012706	Fibronectin type-III domain-containing protein.	Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.	0.868
ENSSPAP00000020470	itga2b	ENSSPAP00000020470	ENSSPAP00000015709	Fibronectin type-III domain-containing protein.	Integrin, alpha 2b; Belongs to the integrin alpha chain family.	0.897
ENSSPAP00000020470	itga6	ENSSPAP00000020470	ENSSPAP00000008656	Fibronectin type-III domain-containing protein.	Integrin, alpha 6a; Belongs to the integrin alpha chain family.	0.808
ENSSPAP00000020470	itga8	ENSSPAP00000020470	ENSSPAP00000004313	Fibronectin type-III domain-containing protein.	Integrin, alpha 8; Belongs to the integrin alpha chain family.	0.897