17 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gab1	GRB2-associated binding protein 1. (787 aa)
	ltk	Tyrosine-protein kinase receptor. (1464 aa)
	SHC3	SHC adaptor protein 3. (466 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	grb2	Growth factor receptor-bound protein 2b. (217 aa)
	LOC103373706	Inositol polyphosphate phosphatase-like 1b. (1222 aa)
	gab2	GRB2-associated binding protein 2. (679 aa)
	shc2	SHC (Src homology 2 domain containing) transforming protein 2. (611 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	LOC103375418	GRB2 related adaptor protein a. (221 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	erbb3	Protein kinase domain-containing protein. (1425 aa)
	LOC103359176	GRB2 related adaptor protein b. (217 aa)
	ENSSPAP00000018486	PH domain-containing protein. (356 aa)
	erbb4	Receptor protein-tyrosine kinase. (1285 aa)
	shc1	SHC (Src homology 2 domain containing) transforming protein 1. (434 aa)
	ENSSPAP00000026412	Uncharacterized protein. (280 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000018486	ENSSPAP00000026412	ENSSPAP00000018486	ENSSPAP00000026412	PH domain-containing protein.	Uncharacterized protein.	0.812
ENSSPAP00000018486	LOC103357838	ENSSPAP00000018486	ENSSPAP00000012523	PH domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.957
ENSSPAP00000018486	LOC103359176	ENSSPAP00000018486	ENSSPAP00000017678	PH domain-containing protein.	GRB2 related adaptor protein b.	0.871
ENSSPAP00000018486	LOC103375418	ENSSPAP00000018486	ENSSPAP00000015407	PH domain-containing protein.	GRB2 related adaptor protein a.	0.871
ENSSPAP00000018486	SHC3	ENSSPAP00000018486	ENSSPAP00000004729	PH domain-containing protein.	SHC adaptor protein 3.	0.812
ENSSPAP00000018486	erbb3	ENSSPAP00000018486	ENSSPAP00000016345	PH domain-containing protein.	Protein kinase domain-containing protein.	0.727
ENSSPAP00000018486	erbb4	ENSSPAP00000018486	ENSSPAP00000018858	PH domain-containing protein.	Receptor protein-tyrosine kinase.	0.727
ENSSPAP00000018486	gab2	ENSSPAP00000018486	ENSSPAP00000008453	PH domain-containing protein.	GRB2-associated binding protein 2.	0.852
ENSSPAP00000018486	grb2	ENSSPAP00000018486	ENSSPAP00000005312	PH domain-containing protein.	Growth factor receptor-bound protein 2b.	0.991
ENSSPAP00000018486	ltk	ENSSPAP00000018486	ENSSPAP00000004411	PH domain-containing protein.	Tyrosine-protein kinase receptor.	0.780
ENSSPAP00000018486	ptpn11	ENSSPAP00000018486	ENSSPAP00000015764	PH domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.957
ENSSPAP00000018486	ptpn6	ENSSPAP00000018486	ENSSPAP00000005164	PH domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.957
ENSSPAP00000018486	shc1	ENSSPAP00000018486	ENSSPAP00000023879	PH domain-containing protein.	SHC (Src homology 2 domain containing) transforming protein 1.	0.812
ENSSPAP00000018486	shc2	ENSSPAP00000018486	ENSSPAP00000009333	PH domain-containing protein.	SHC (Src homology 2 domain containing) transforming protein 2.	0.889
ENSSPAP00000026412	ENSSPAP00000018486	ENSSPAP00000026412	ENSSPAP00000018486	Uncharacterized protein.	PH domain-containing protein.	0.812
ENSSPAP00000026412	LOC103357838	ENSSPAP00000026412	ENSSPAP00000012523	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.730
ENSSPAP00000026412	LOC103359176	ENSSPAP00000026412	ENSSPAP00000017678	Uncharacterized protein.	GRB2 related adaptor protein b.	0.774
ENSSPAP00000026412	LOC103373706	ENSSPAP00000026412	ENSSPAP00000007595	Uncharacterized protein.	Inositol polyphosphate phosphatase-like 1b.	0.895
ENSSPAP00000026412	LOC103375418	ENSSPAP00000026412	ENSSPAP00000015407	Uncharacterized protein.	GRB2 related adaptor protein a.	0.774
ENSSPAP00000026412	SHC3	ENSSPAP00000026412	ENSSPAP00000004729	Uncharacterized protein.	SHC adaptor protein 3.	0.823