5 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kctd15	BTB domain-containing protein. (270 aa)
	ENSSPAP00000010587	DUF3504 domain-containing protein. (498 aa)
	tfap2a	Transcription factor AP-2 alpha. (453 aa)
	LOC103354698	BTB domain-containing protein. (258 aa)
	tfap2d	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta). (454 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000010587	LOC103354698	ENSSPAP00000010587	ENSSPAP00000020568	DUF3504 domain-containing protein.	BTB domain-containing protein.	0.885
ENSSPAP00000010587	kctd15	ENSSPAP00000010587	ENSSPAP00000003980	DUF3504 domain-containing protein.	BTB domain-containing protein.	0.838
ENSSPAP00000010587	tfap2a	ENSSPAP00000010587	ENSSPAP00000010835	DUF3504 domain-containing protein.	Transcription factor AP-2 alpha.	0.679
ENSSPAP00000010587	tfap2d	ENSSPAP00000010587	ENSSPAP00000022039	DUF3504 domain-containing protein.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.747
LOC103354698	ENSSPAP00000010587	ENSSPAP00000020568	ENSSPAP00000010587	BTB domain-containing protein.	DUF3504 domain-containing protein.	0.885
LOC103354698	tfap2a	ENSSPAP00000020568	ENSSPAP00000010835	BTB domain-containing protein.	Transcription factor AP-2 alpha.	0.679
LOC103354698	tfap2d	ENSSPAP00000020568	ENSSPAP00000022039	BTB domain-containing protein.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.747
kctd15	ENSSPAP00000010587	ENSSPAP00000003980	ENSSPAP00000010587	BTB domain-containing protein.	DUF3504 domain-containing protein.	0.838
kctd15	tfap2a	ENSSPAP00000003980	ENSSPAP00000010835	BTB domain-containing protein.	Transcription factor AP-2 alpha.	0.679
kctd15	tfap2d	ENSSPAP00000003980	ENSSPAP00000022039	BTB domain-containing protein.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.747
tfap2a	ENSSPAP00000010587	ENSSPAP00000010835	ENSSPAP00000010587	Transcription factor AP-2 alpha.	DUF3504 domain-containing protein.	0.679
tfap2a	LOC103354698	ENSSPAP00000010835	ENSSPAP00000020568	Transcription factor AP-2 alpha.	BTB domain-containing protein.	0.679
tfap2a	kctd15	ENSSPAP00000010835	ENSSPAP00000003980	Transcription factor AP-2 alpha.	BTB domain-containing protein.	0.679
tfap2a	tfap2d	ENSSPAP00000010835	ENSSPAP00000022039	Transcription factor AP-2 alpha.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.624
tfap2d	ENSSPAP00000010587	ENSSPAP00000022039	ENSSPAP00000010587	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	DUF3504 domain-containing protein.	0.747
tfap2d	LOC103354698	ENSSPAP00000022039	ENSSPAP00000020568	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	BTB domain-containing protein.	0.747
tfap2d	kctd15	ENSSPAP00000022039	ENSSPAP00000003980	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	BTB domain-containing protein.	0.747
tfap2d	tfap2a	ENSSPAP00000022039	ENSSPAP00000010835	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Transcription factor AP-2 alpha.	0.624