41 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103366440	NOT2_3_5 domain-containing protein. (536 aa)
	cnot6l	CCR4-NOT transcription complex, subunit 6-like. (553 aa)
	mlh1	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (738 aa)
	samd4b	Sterile alpha motif domain containing 4B. (671 aa)
	lrrc27	Uncharacterized protein. (428 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	pan2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1210 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (249 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2333 aa)
	exosc5	Exosome component 5. (220 aa)
	pde12	Phosphodiesterase 12. (591 aa)
	ENSSPAP00000019704	Decapping mRNA 2. (248 aa)
	pan3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (793 aa)
	rc3h1	Ring finger and CCCH-type domains 1b. (1136 aa)
	exosc2	Exosome component 2. (293 aa)
	LOC103361824	Sb:cb81. (397 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	LOC103366853	CCR4-NOT transcription complex, subunit 7. (248 aa)
	LOC103375326	Endo/exonuclease/phosphatase domain-containing protein. (367 aa)
	zfp36l1	Zinc finger protein 36, C3H type-like 1a. (372 aa)
	zfp36l2	Zinc finger protein 36, C3H type-like 2. (430 aa)
	ENSSPAP00000011494	Uncharacterized protein. (117 aa)
	cnot8	CCR4-NOT transcription complex, subunit 8. (285 aa)
	samd4a	Sterile alpha motif domain containing 4A. (604 aa)
	LOC103366231	Poly(A)-specific ribonuclease (deadenylation nuclease). (682 aa)
	LOC103363970	Zgc:162730. (425 aa)
	cnot2	CCR4-NOT transcription complex, subunit 2. (451 aa)
	ENSSPAP00000008883	Uncharacterized protein. (58 aa)
	dcp1a	Decapping mRNA 1A. (506 aa)
	exosc3	Exosome component 3. (244 aa)
	rc3h2	Ring finger and CCCH-type domains 2. (1156 aa)
	patl2	PAT1 homolog 2. (625 aa)
	exosc7	Exosome component 7. (291 aa)
	exosc9	Exosome component 9. (420 aa)
	cnot3	CCR4-NOT transcription complex, subunit 3a. (891 aa)
	exosc8	Exosome component 8. (277 aa)
	dcps	Decapping enzyme, scavenger. (330 aa)
	patl1	PAT1 homolog 1, processing body mRNA decay factor. (752 aa)
	LOC103366045	CCR4-NOT transcription complex, subunit 3b. (929 aa)
	cnot6	CCR4-NOT transcription complex, subunit 6a. (559 aa)
	noct	Nocturnin. (465 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT7	ENSSPAP00000008883	ENSSPAP00000025133	ENSSPAP00000008883	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.915
CNOT7	ENSSPAP00000011494	ENSSPAP00000025133	ENSSPAP00000011494	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.497
CNOT7	ENSSPAP00000019704	ENSSPAP00000025133	ENSSPAP00000019704	CCR4-NOT transcription complex subunit 7.	Decapping mRNA 2.	0.907
CNOT7	LOC103361824	ENSSPAP00000025133	ENSSPAP00000017927	CCR4-NOT transcription complex subunit 7.	Sb:cb81.	0.455
CNOT7	LOC103363970	ENSSPAP00000025133	ENSSPAP00000008978	CCR4-NOT transcription complex subunit 7.	Zgc:162730.	0.455
CNOT7	LOC103366045	ENSSPAP00000025133	ENSSPAP00000001851	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 3b.	0.966
CNOT7	LOC103366440	ENSSPAP00000025133	ENSSPAP00000018544	CCR4-NOT transcription complex subunit 7.	NOT2_3_5 domain-containing protein.	0.943
CNOT7	LOC103375326	ENSSPAP00000025133	ENSSPAP00000014561	CCR4-NOT transcription complex subunit 7.	Endo/exonuclease/phosphatase domain-containing protein.	0.836
CNOT7	cnot1	ENSSPAP00000025133	ENSSPAP00000024988	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 1.	0.983
CNOT7	cnot2	ENSSPAP00000025133	ENSSPAP00000008928	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 2.	0.943
CNOT7	cnot3	ENSSPAP00000025133	ENSSPAP00000005007	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 3a.	0.966
CNOT7	cnot6	ENSSPAP00000025133	ENSSPAP00000000198	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 6a.	0.923
CNOT7	cnot6l	ENSSPAP00000025133	ENSSPAP00000030583	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 6-like.	0.932
CNOT7	cnot8	ENSSPAP00000025133	ENSSPAP00000010229	CCR4-NOT transcription complex subunit 7.	CCR4-NOT transcription complex, subunit 8.	0.909
CNOT7	dcp1a	ENSSPAP00000025133	ENSSPAP00000008141	CCR4-NOT transcription complex subunit 7.	Decapping mRNA 1A.	0.497
CNOT7	lrrc27	ENSSPAP00000025133	ENSSPAP00000028534	CCR4-NOT transcription complex subunit 7.	Uncharacterized protein.	0.904
CNOT7	noct	ENSSPAP00000025133	ENSSPAP00000031398	CCR4-NOT transcription complex subunit 7.	Nocturnin.	0.836
CNOT7	pan2	ENSSPAP00000025133	ENSSPAP00000026561	CCR4-NOT transcription complex subunit 7.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...]	0.424
CNOT7	pan3	ENSSPAP00000025133	ENSSPAP00000019613	CCR4-NOT transcription complex subunit 7.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]	0.416
CNOT7	patl1	ENSSPAP00000025133	ENSSPAP00000004198	CCR4-NOT transcription complex subunit 7.	PAT1 homolog 1, processing body mRNA decay factor.	0.885