34 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ythdf3	YTH N(6)-methyladenosine RNA binding protein 3. (606 aa)
	sigirr	Single immunoglobulin and toll-interleukin 1 receptor (TIR) domain. (525 aa)
	adar	Adenosine deaminase RNA specific. (1338 aa)
	traip	TRAF-interacting protein. (449 aa)
	LOC103358771	Extracellular matrix protein 1a. (139 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (917 aa)
	mul1	Mitochondrial E3 ubiquitin protein ligase 1b. (352 aa)
	apoa4	Uncharacterized protein. (235 aa)
	ENSSPAP00000023501	Coiled-coil domain containing 3b. (267 aa)
	ythdf2	YTH N(6)-methyladenosine RNA binding protein 2. (638 aa)
	LOC103370376	Uncharacterized protein. (430 aa)
	pias4	Protein inhibitor of activated STAT, 4a. (507 aa)
	gas6	Uncharacterized protein. (650 aa)
	ENSSPAP00000020574	Uncharacterized protein. (176 aa)
	otud4	Uncharacterized protein. (426 aa)
	mettl3	Methyltransferase like 3; Belongs to the MT-A70-like family. (591 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	LOC103355780	Uncharacterized protein. (897 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (485 aa)
	LOC103356259	Poly [ADP-ribose] polymerase. (1774 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	LOC103357298	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family. (773 aa)
	LOC103372969	Uncharacterized protein. (896 aa)
	ENSSPAP00000011040	Nuclear receptor subfamily 1, group H, member 5. (378 aa)
	LOC103368476	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (166 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1045 aa)
	ENSSPAP00000004154	Uncharacterized protein. (155 aa)
	ecm1	Uncharacterized protein. (569 aa)
	LOC103358823	Cylindromatosis (turban tumor syndrome), b. (681 aa)
	OTOP1	Otopetrin 1. (596 aa)
	ENSSPAP00000001653	Uncharacterized protein. (454 aa)
	samhd1	SAM domain and HD domain 1. (625 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	sh2b3	SH2B adaptor protein 3. (749 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000001653	adar	ENSSPAP00000001653	ENSSPAP00000029773	Uncharacterized protein.	Adenosine deaminase RNA specific.	0.492
ENSSPAP00000011040	LOC103368476	ENSSPAP00000011040	ENSSPAP00000009514	Nuclear receptor subfamily 1, group H, member 5.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.413
ENSSPAP00000011040	pias4	ENSSPAP00000011040	ENSSPAP00000021135	Nuclear receptor subfamily 1, group H, member 5.	Protein inhibitor of activated STAT, 4a.	0.474
LOC103355780	LOC103357298	ENSSPAP00000016465	ENSSPAP00000011276	Uncharacterized protein.	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	0.839
LOC103355780	LOC103358823	ENSSPAP00000016465	ENSSPAP00000002372	Uncharacterized protein.	Cylindromatosis (turban tumor syndrome), b.	0.845
LOC103355780	cyld	ENSSPAP00000016465	ENSSPAP00000026507	Uncharacterized protein.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.836
LOC103355780	traip	ENSSPAP00000016465	ENSSPAP00000028799	Uncharacterized protein.	TRAF-interacting protein.	0.401
LOC103357298	LOC103355780	ENSSPAP00000011276	ENSSPAP00000016465	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.839
LOC103357298	LOC103358823	ENSSPAP00000011276	ENSSPAP00000002372	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	Cylindromatosis (turban tumor syndrome), b.	0.834
LOC103357298	cyld	ENSSPAP00000011276	ENSSPAP00000026507	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.836
LOC103357298	traip	ENSSPAP00000011276	ENSSPAP00000028799	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	TRAF-interacting protein.	0.407
LOC103357827	gas6	ENSSPAP00000012078	ENSSPAP00000020703	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.410
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103357827	sigirr	ENSSPAP00000012078	ENSSPAP00000030437	RAB guanine nucleotide exchange factor (GEF) 1, like.	Single immunoglobulin and toll-interleukin 1 receptor (TIR) domain.	0.485
LOC103358823	LOC103355780	ENSSPAP00000002372	ENSSPAP00000016465	Cylindromatosis (turban tumor syndrome), b.	Uncharacterized protein.	0.845
LOC103358823	LOC103357298	ENSSPAP00000002372	ENSSPAP00000011276	Cylindromatosis (turban tumor syndrome), b.	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	0.834
LOC103358823	cyld	ENSSPAP00000002372	ENSSPAP00000026507	Cylindromatosis (turban tumor syndrome), b.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.840
LOC103358823	traip	ENSSPAP00000002372	ENSSPAP00000028799	Cylindromatosis (turban tumor syndrome), b.	TRAF-interacting protein.	0.407
LOC103368476	ENSSPAP00000011040	ENSSPAP00000009514	ENSSPAP00000011040	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Nuclear receptor subfamily 1, group H, member 5.	0.413
LOC103368476	adar	ENSSPAP00000009514	ENSSPAP00000029773	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Adenosine deaminase RNA specific.	0.491