17 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103373286	PAS domain-containing protein. (900 aa)
	LOC103375488	Ig-like domain-containing protein; Belongs to the MHC class I family. (396 aa)
	il7r	Fibronectin type-III domain-containing protein. (416 aa)
	thoc1	THO complex 1. (643 aa)
	LOC103360208	Aryl hydrocarbon receptor 2. (1009 aa)
	LOC103360209	Aryl hydrocarbon receptor 1b. (920 aa)
	cd55	Uncharacterized protein. (336 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	igf2	Insulin-like growth factor 2b. (215 aa)
	tbx21	T-box transcription factor 21. (620 aa)
	ENSSPAP00000004244	Fibronectin type-III domain-containing protein. (217 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1045 aa)
	ENSSPAP00000007822	Uncharacterized protein. (309 aa)
	parp3	Poly [ADP-ribose] polymerase. (529 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	LOC103374154	Uncharacterized protein. (981 aa)
	gfer	Sulfhydryl oxidase. (196 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000004244	LOC103357827	ENSSPAP00000004244	ENSSPAP00000012078	Fibronectin type-III domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.485
ENSSPAP00000004244	rabgef1	ENSSPAP00000004244	ENSSPAP00000001267	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.485
ENSSPAP00000004244	thoc1	ENSSPAP00000004244	ENSSPAP00000025059	Fibronectin type-III domain-containing protein.	THO complex 1.	0.407
LOC103357827	ENSSPAP00000004244	ENSSPAP00000012078	ENSSPAP00000004244	RAB guanine nucleotide exchange factor (GEF) 1, like.	Fibronectin type-III domain-containing protein.	0.485
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
il7r	ptprc	ENSSPAP00000024496	ENSSPAP00000004799	Fibronectin type-III domain-containing protein.	Protein tyrosine phosphatase receptor type C.	0.651
il7r	tbx21	ENSSPAP00000024496	ENSSPAP00000002899	Fibronectin type-III domain-containing protein.	T-box transcription factor 21.	0.435
ptprc	il7r	ENSSPAP00000004799	ENSSPAP00000024496	Protein tyrosine phosphatase receptor type C.	Fibronectin type-III domain-containing protein.	0.651
ptprc	tbx21	ENSSPAP00000004799	ENSSPAP00000002899	Protein tyrosine phosphatase receptor type C.	T-box transcription factor 21.	0.415
rabgef1	ENSSPAP00000004244	ENSSPAP00000001267	ENSSPAP00000004244	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.485
rabgef1	LOC103357827	ENSSPAP00000001267	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.672
tbx21	il7r	ENSSPAP00000002899	ENSSPAP00000024496	T-box transcription factor 21.	Fibronectin type-III domain-containing protein.	0.435
tbx21	ptprc	ENSSPAP00000002899	ENSSPAP00000004799	T-box transcription factor 21.	Protein tyrosine phosphatase receptor type C.	0.415
thoc1	ENSSPAP00000004244	ENSSPAP00000025059	ENSSPAP00000004244	THO complex 1.	Fibronectin type-III domain-containing protein.	0.407