(5 nodes) Zeta DNA polymerase complex network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000010503	DNA_pol_B domain-containing protein. (310 aa)
	LOC103372802	Uncharacterized protein. (445 aa)
	mad2l2	Mitotic arrest deficient 2 like 2. (210 aa)
	ENSSPAP00000010489	Uncharacterized protein. (564 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (472 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000010489	ENSSPAP00000010503	ENSSPAP00000010489	ENSSPAP00000010503	Uncharacterized protein.	DNA_pol_B domain-containing protein.	0.900
ENSSPAP00000010489	LOC103372802	ENSSPAP00000010489	ENSSPAP00000002931	Uncharacterized protein.	Uncharacterized protein.	0.968
ENSSPAP00000010489	mad2l2	ENSSPAP00000010489	ENSSPAP00000007825	Uncharacterized protein.	Mitotic arrest deficient 2 like 2.	0.985
ENSSPAP00000010489	pold2	ENSSPAP00000010489	ENSSPAP00000016750	Uncharacterized protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.984
ENSSPAP00000010503	ENSSPAP00000010489	ENSSPAP00000010503	ENSSPAP00000010489	DNA_pol_B domain-containing protein.	Uncharacterized protein.	0.900
ENSSPAP00000010503	LOC103372802	ENSSPAP00000010503	ENSSPAP00000002931	DNA_pol_B domain-containing protein.	Uncharacterized protein.	0.978
ENSSPAP00000010503	mad2l2	ENSSPAP00000010503	ENSSPAP00000007825	DNA_pol_B domain-containing protein.	Mitotic arrest deficient 2 like 2.	0.985
ENSSPAP00000010503	pold2	ENSSPAP00000010503	ENSSPAP00000016750	DNA_pol_B domain-containing protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.989
LOC103372802	ENSSPAP00000010489	ENSSPAP00000002931	ENSSPAP00000010489	Uncharacterized protein.	Uncharacterized protein.	0.968
LOC103372802	ENSSPAP00000010503	ENSSPAP00000002931	ENSSPAP00000010503	Uncharacterized protein.	DNA_pol_B domain-containing protein.	0.978
LOC103372802	mad2l2	ENSSPAP00000002931	ENSSPAP00000007825	Uncharacterized protein.	Mitotic arrest deficient 2 like 2.	0.976
LOC103372802	pold2	ENSSPAP00000002931	ENSSPAP00000016750	Uncharacterized protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.998
mad2l2	ENSSPAP00000010489	ENSSPAP00000007825	ENSSPAP00000010489	Mitotic arrest deficient 2 like 2.	Uncharacterized protein.	0.985
mad2l2	ENSSPAP00000010503	ENSSPAP00000007825	ENSSPAP00000010503	Mitotic arrest deficient 2 like 2.	DNA_pol_B domain-containing protein.	0.985
mad2l2	LOC103372802	ENSSPAP00000007825	ENSSPAP00000002931	Mitotic arrest deficient 2 like 2.	Uncharacterized protein.	0.976
mad2l2	pold2	ENSSPAP00000007825	ENSSPAP00000016750	Mitotic arrest deficient 2 like 2.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.977
pold2	ENSSPAP00000010489	ENSSPAP00000016750	ENSSPAP00000010489	Polymerase (DNA directed), delta 2, regulatory subunit.	Uncharacterized protein.	0.984
pold2	ENSSPAP00000010503	ENSSPAP00000016750	ENSSPAP00000010503	Polymerase (DNA directed), delta 2, regulatory subunit.	DNA_pol_B domain-containing protein.	0.989
pold2	LOC103372802	ENSSPAP00000016750	ENSSPAP00000002931	Polymerase (DNA directed), delta 2, regulatory subunit.	Uncharacterized protein.	0.998
pold2	mad2l2	ENSSPAP00000016750	ENSSPAP00000007825	Polymerase (DNA directed), delta 2, regulatory subunit.	Mitotic arrest deficient 2 like 2.	0.977