(17 nodes) NuRD complex network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103357053	RB binding protein 4, chromatin remodeling factor. (424 aa)
	aire	Autoimmune regulator. (433 aa)
	mta1	Metastasis associated 1. (625 aa)
	LOC103366349	Retinoblastoma binding protein 4, like. (427 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (2109 aa)
	LOC103356839	Chromodomain helicase DNA binding protein 4a. (1792 aa)
	LOC103371089	GATA zinc finger domain containing 2Ab. (650 aa)
	mta2	Metastasis associated 1 family, member 2. (663 aa)
	mta3	Metastasis associated 1 family, member 3. (590 aa)
	chd5	Chromodomain helicase DNA binding protein 5. (1855 aa)
	RBBP4	RB binding protein 4, chromatin remodeling factor. (425 aa)
	LOC103357610	GATA zinc finger domain containing 2A. (410 aa)
	ENSSPAP00000030721	Uncharacterized protein. (126 aa)
	gatad2b	GATA zinc finger domain containing 2B. (653 aa)
	ENSSPAP00000005334	Helicase ATP-binding domain-containing protein. (361 aa)
	ENSSPAP00000005298	Uncharacterized protein. (359 aa)
	ENSSPAP00000005250	CHDCT2 domain-containing protein. (232 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000005250	ENSSPAP00000005298	ENSSPAP00000005250	ENSSPAP00000005298	CHDCT2 domain-containing protein.	Uncharacterized protein.	0.932
ENSSPAP00000005250	ENSSPAP00000005334	ENSSPAP00000005250	ENSSPAP00000005334	CHDCT2 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.641
ENSSPAP00000005250	ENSSPAP00000030721	ENSSPAP00000005250	ENSSPAP00000030721	CHDCT2 domain-containing protein.	Uncharacterized protein.	0.759
ENSSPAP00000005250	LOC103357053	ENSSPAP00000005250	ENSSPAP00000027778	CHDCT2 domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.817
ENSSPAP00000005250	LOC103357610	ENSSPAP00000005250	ENSSPAP00000030713	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2A.	0.759
ENSSPAP00000005250	LOC103366349	ENSSPAP00000005250	ENSSPAP00000014953	CHDCT2 domain-containing protein.	Retinoblastoma binding protein 4, like.	0.817
ENSSPAP00000005250	LOC103371089	ENSSPAP00000005250	ENSSPAP00000024246	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2Ab.	0.759
ENSSPAP00000005250	RBBP4	ENSSPAP00000005250	ENSSPAP00000027234	CHDCT2 domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.817
ENSSPAP00000005250	gatad2b	ENSSPAP00000005250	ENSSPAP00000007347	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2B.	0.759
ENSSPAP00000005250	mta1	ENSSPAP00000005250	ENSSPAP00000013654	CHDCT2 domain-containing protein.	Metastasis associated 1.	0.794
ENSSPAP00000005250	mta2	ENSSPAP00000005250	ENSSPAP00000024688	CHDCT2 domain-containing protein.	Metastasis associated 1 family, member 2.	0.798
ENSSPAP00000005250	mta3	ENSSPAP00000005250	ENSSPAP00000024957	CHDCT2 domain-containing protein.	Metastasis associated 1 family, member 3.	0.794
ENSSPAP00000005298	ENSSPAP00000005250	ENSSPAP00000005298	ENSSPAP00000005250	Uncharacterized protein.	CHDCT2 domain-containing protein.	0.932
ENSSPAP00000005298	ENSSPAP00000005334	ENSSPAP00000005298	ENSSPAP00000005334	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.523
ENSSPAP00000005298	ENSSPAP00000030721	ENSSPAP00000005298	ENSSPAP00000030721	Uncharacterized protein.	Uncharacterized protein.	0.759
ENSSPAP00000005298	LOC103357053	ENSSPAP00000005298	ENSSPAP00000027778	Uncharacterized protein.	RB binding protein 4, chromatin remodeling factor.	0.817
ENSSPAP00000005298	LOC103357610	ENSSPAP00000005298	ENSSPAP00000030713	Uncharacterized protein.	GATA zinc finger domain containing 2A.	0.759
ENSSPAP00000005298	LOC103366349	ENSSPAP00000005298	ENSSPAP00000014953	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.817
ENSSPAP00000005298	LOC103371089	ENSSPAP00000005298	ENSSPAP00000024246	Uncharacterized protein.	GATA zinc finger domain containing 2Ab.	0.759
ENSSPAP00000005298	RBBP4	ENSSPAP00000005298	ENSSPAP00000027234	Uncharacterized protein.	RB binding protein 4, chromatin remodeling factor.	0.817